PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_24010-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 763aa MW: 84543.5 Da PI: 7.312

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_24010-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117.6	6.5e-37	116	191	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC+adl + ++yhrrhkvCe h+k++ v ++++e+rfCqqCsrfh ++efDe+k+sCr+rLa+hn+rrrk+ TRIUR3_24010-P1 116 CQVDGCHADLGDDRDYHRRHKVCEPHTKSTLVRIRNIEHRFCQQCSRFHLVQEFDEGKKSCRSRLATHNRRRRKAP 191 *************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-30	108	177	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.171	113	190	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-34	114	193	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-27	116	189	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.0E-4	534	681	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.15E-5	534	682	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MSSGLKNKKK KGHEWDLNDW RWDGNLFLAM PSPNADAPSG CGSRELGRAE EGGSFGAAAA 60 DKRRRRRRVT TVDNPEECSN TAIPHERIAV RGGQIGEEEG PASAAAGASS SSAPSCQVDG 120 CHADLGDDRD YHRRHKVCEP HTKSTLVRIR NIEHRFCQQC SRFHLVQEFD EGKKSCRSRL 180 ATHNRRRRKA PAEAVNSLGE NQSLTNTLLL LLRQLAGQDS AASSSEQING PNLLVSLLKN 240 LAAVAGTQAC QDMLKDATSS NAGNYVGNQS RPPVHAEEPP VKRRAQNFDL NDAYVEEDEI 300 LNWLSHYPSD MESYIRPGCV ILTIYLRLPN WMWDKLNVDP APWIENLISI STRGFWEKGW 360 LYARVQDHLT LSCNGRLMLV SPWQPVIGDK HQILLLCIFD GKYLVQEATQ KLHDDTRIQQ 420 GPQCLTFSCS FPITSGRGFI EVEDYDQSSI SFPFVVAEES ICCEIRMLEE KLNIIAFGEG 480 RKDLMASRSQ ALKFLHEIGW LLQRSHTRAT SSKAPQQFRH RVVGFPAARF RWLLSFAVDQ 540 EWCGVVKMLL DTLFQGNIDI ASPVEFVLGE SLVFAAVNKR SKPLVASLLR YTTKSAPVGS 600 GAVATPARFL FTPDMTGPSD ITPLHVAATI SNAAAVLDAL TDDPQQLGIK TWKNARDASG 660 YTPEDYARRR GHTSYIQMVQ NKINSRLPAA HVSVSMTTTG IAEKHADAEK QSQEPGIDIW 720 SAGNWPVWQG GHFLRQGDPD HDAVGRFSIT DDVSIIVGLL TAG

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MSSGLKNKKK KGHEWDLNDW RWDGNLFLAM PSPNADAPSG CGSRELGRAE EGGSFGAAAA  60
DKRRRRRRVT TVDNPEECSN TAIPHERIAV RGGQIGEEEG PASAAAGASS SSAPSCQVDG  120
CHADLGDDRD YHRRHKVCEP HTKSTLVRIR NIEHRFCQQC SRFHLVQEFD EGKKSCRSRL  180
ATHNRRRRKA PAEAVNSLGE NQSLTNTLLL LLRQLAGQDS AASSSEQING PNLLVSLLKN  240
LAAVAGTQAC QDMLKDATSS NAGNYVGNQS RPPVHAEEPP VKRRAQNFDL NDAYVEEDEI  300
LNWLSHYPSD MESYIRPGCV ILTIYLRLPN WMWDKLNVDP APWIENLISI STRGFWEKGW  360
LYARVQDHLT LSCNGRLMLV SPWQPVIGDK HQILLLCIFD GKYLVQEATQ KLHDDTRIQQ  420
GPQCLTFSCS FPITSGRGFI EVEDYDQSSI SFPFVVAEES ICCEIRMLEE KLNIIAFGEG  480
RKDLMASRSQ ALKFLHEIGW LLQRSHTRAT SSKAPQQFRH RVVGFPAARF RWLLSFAVDQ  540
EWCGVVKMLL DTLFQGNIDI ASPVEFVLGE SLVFAAVNKR SKPLVASLLR YTTKSAPVGS  600
GAVATPARFL FTPDMTGPSD ITPLHVAATI SNAAAVLDAL TDDPQQLGIK TWKNARDASG  660
YTPEDYARRR GHTSYIQMVQ NKINSRLPAA HVSVSMTTTG IAEKHADAEK QSQEPGIDIW  720
SAGNWPVWQG GHFLRQGDPD HDAVGRFSIT DDVSIIVGLL TAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-25	107	189	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	66	KRRRRR
2	61	67	KRRRRRR
3	61	68	KRRRRRRV
4	62	67	RRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF447881	0.0	KF447881.1 Triticum aestivum squamosa promoter-binding-like protein 1 (SPL1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160962.1	0.0	squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	M7YKG5	0.0	M7YKG5_TRIUA; Squamosa promoter-binding-like protein 1
STRING	TRIUR3_24010-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-92	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]