PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01433.1.g00130.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 181aa MW: 20167.1 Da PI: 8.3886 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 58.6 | 1.6e-18 | 123 | 164 | 2 | 43 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfC 43 Cqv+gC+adls a++yh+rhkvCe+h++++vv ++g+e+rfC Zpz_sc01433.1.g00130.1.am.mkhc 123 CQVDGCQADLSGARDYHKRHKVCEAHTRSTVVRIKGVEHRFC 164 ****************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-20 | 115 | 165 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 15.349 | 120 | 181 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.81E-18 | 121 | 165 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-15 | 123 | 165 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEAGFLRGEE NGDRTDAARM SGGNQNRSSE WSLNDWRWDT NLFLATPSSA APSECGGRDY 60 IRSQGEIDFG VVDKRRRVSP EDNSAECSNA AAANGENRSV QRGRSNEEER PRKGSSSSAP 120 PSCQVDGCQA DLSGARDYHK RHKVCEAHTR STVVRIKGVE HRFCFTFFKN LMKERRAAVH 180 V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 77 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01433.1.g00130.1.am.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819590.1 | 8e-75 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Refseq | XP_025819591.1 | 8e-75 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Refseq | XP_025819592.1 | 7e-75 | squamosa promoter-binding-like protein 1 isoform X2 | ||||
Refseq | XP_025819593.1 | 6e-75 | squamosa promoter-binding-like protein 1 isoform X3 | ||||
Refseq | XP_025819594.1 | 6e-75 | squamosa promoter-binding-like protein 1 isoform X4 | ||||
Swissprot | Q9LGU7 | 3e-60 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2S3HW29 | 1e-73 | A0A2S3HW29_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DNE4 | 1e-73 | A0A2T7DNE4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6SNB5 | 5e-75 | A0A3L6SNB5_PANMI; Squamosa promoter-binding-like protein 1 | ||||
STRING | Pavir.Eb01272.1.p | 6e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1998 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 3e-20 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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