PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462930695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 873aa MW: 98281.8 Da PI: 7.2908 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123 | 1.3e-38 | 124 | 200 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC+adls a++yh+rhkvCe+h+++ +v ++g+e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn rrrk q+ 462930695 124 CQVDGCQADLSGARDYHKRHKVCEAHTRSRMVRIKGIEHRFCQQCSRFHLLQEFDEGKKSCRSRLAQHNGRRRKVQP 200 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-31 | 117 | 185 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.188 | 121 | 198 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.84E-36 | 122 | 202 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.8E-30 | 124 | 197 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 8.23E-6 | 611 | 756 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.4E-4 | 612 | 753 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 873 aa Download sequence Send to blast |
MEAGFLWKGN GNRADAAGMS GGHNNRSVEW DLNDWSWNTN LFLATPSSAV PSERGGRDTI 60 RSQGEIDFGV VDKWRRVSPE DDSAECSNSI VANRENHGVV VQRARSSEEE RPRKGARSSS 120 SPSCQVDGCQ ADLSGARDYH KRHKVCEAHT RSRMVRIKGI EHRFCQQCSR FHLLQEFDEG 180 KKSCRSRLAQ HNGRRRKVQP QATVDGNSMI ENQSLSSTLF LLLKQLSGLE SGSSSERIDH 240 PNYLVNILKN LASIAGTQAY QEILKNANST SISSNAGNRI ANGFSMHDQT RPTLRVVTES 300 SPEEHPVKRR VQNFDLNDAC IEDVESRTDK IVFKLFGKEP KDFPVNLREQ ILNWLSHYPS 360 EMESYIRPGC VILTIYLRLP NWMWDEFDED PAPWIEKLIS MSNDGFWETE WVYARLQNWL 420 TLSCNGSLVL ASPWQPLIGD KHRRLCVTPI AVACSSTANF SVKGFNIVQP TTKLLCIFGE 480 KHLIQAETQM LLEDTTIQQD PQCLSFSCSF PSTSGRGLIE IEDYDQSSLS VPFVVTDEDI 540 CLEIRMLEHE LNMIPVCETL EHIDDLMASH NRALYFLQEF GWLLQRSHMR AMSDQARYCT 600 EGFPVGRFRW LLSFAVDHEW CAVVKKLLNI MFQGNLDVPS PDEFVQGLNL LFVAVNKRSK 660 PLVECLLRYT TPVDTGATTP VQFLFTPLMT GPPNITPLHT AATISDAAGV LDALTDDPQQ 720 MGIKVWKNAR DATGFTPEDY ARKRGFIPYI QMVQEKIDRK IPKAHISIAI ASAPSTTNIV 780 GKHNSRLNLA DKTTFDVEKS HSGIKQPPVS CNRCVQQLAY RPKTSRFLSN RPAVLSLVAI 840 AAVCVCVGLL MKSPPHIGCM RPFIWEHIKW GPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-28 | 118 | 197 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462930695 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819590.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Refseq | XP_025819591.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Swissprot | Q9LGU7 | 0.0 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2S3HWL1 | 0.0 | A0A2S3HWL1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DNE4 | 0.0 | A0A2T7DNE4_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G133646_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1998 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 1e-180 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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