PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_3503725F1.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 966aa    MW: 105557 Da    PI: 5.571
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_3503725F1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.7e-40153230178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +CqvegC adls ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Traes_5BL_3503725F1.2 153 ACQVEGCCADLSAAKDYHRRHKVCEMHAKANTAVVGNTIQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTRP 230
                            5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33146215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.308151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-37152231IPR004333Transcription factor, SBP-box
PfamPF031103.6E-29154227IPR004333Transcription factor, SBP-box
PROSITE profilePS502978.667745812IPR020683Ankyrin repeat-containing domain
SMARTSM002482.5745774IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.203.8E-7747853IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.08E-8747852IPR020683Ankyrin repeat-containing domain
CDDcd002041.20E-8750850No hitNo description
SMARTSM00248380791823IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MEAARVGSQS RHLYGGGLGG VLEQARREKR VFGWDLNDWS WDSERFVATP VPAAVGNGLS  60
LNSTPSSSEE AEAEVARNGN GRVDSDKRKR VVVIHDDEDE KDEDPVGNSN NVLSLRIGGS  120
SVAGGTAEDG GVNEEDRNGK KIRVQGGSSS GPACQVEGCC ADLSAAKDYH RRHKVCEMHA  180
KANTAVVGNT IQRFCQQCSR FHLLQEFDEG KRSCRRRLAG HNKRRRKTRP ENAVGGTPIE  240
EKVSSYLLLS LLGICANLNS DNAEHLQGQE LLSNLWRNLG NVAKSLDPKE LCKLLEACQS  300
MQNRSNAGTS EAANALVNTA AAEAAGPSNS KAPFANGGDC GQTSSAVLPV QSNATMVATT  360
GSVFTETPAC KFRNFDLNDT CNDMEGFEDG SNCPSWIRQD STQSPPQTSG NSDSTSAQSL  420
SSSNGDAQCR TDKIVFKLFE KVPSELPPIL RSQILGWLSS SPTDIESHIR PGCIILTVYL  480
RLVESSWREL SENMSVYLDK LSSSSADNFW TSGLVFVMVR HQIAFMHNGQ VMLDRPLAPN  540
SHHYCKVLCV SPVAAPYSAT VNFRVEGFNL VSSSSRLICS IEGRCIFEED TSIMADDTED  600
EDIEYLNFCC SLPGTRGRGF IEVEDSGFSN GFFPFIVAEQ NVCSEVCELE SIFKSSSLEQ  660
PDNDIAMNQA LEFLHELGWL LHRVNIISKH DKVEPPVPAF NLLRFRNLGI FAMEREWCAV  720
TKMLLDLLFD GFVDAGLQSP KDVVLSENLL HSAVRGKSAR MVRFLLTYKP NKNLKETAET  780
YLFRPDAQGP SAFTPLHIAA ATSDAEDVLD ALTDDPGLVG LNAWRNARDE IGFTPEDYAR  840
QSGNDAYINL VQKKIDKHLG KGHVVLGVPS SMCPGITDGM KAGDISLEIC KAMPMTTTSA  900
ARCNICSCQG KMYPNSLART FLYRPAMFTV MGVAVICVCV GILLHTLPKV YAAPNFRWEL  960
LERGAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-31147227484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478800.0KF447880.1 Triticum aestivum squamosa promoter-binding-like protein 6 (SPL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169994.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A3B6LXG50.0A0A3B6LXG5_WHEAT; Uncharacterized protein
STRINGTraes_5BL_3503725F1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]