PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma5g00950.1

Common Name

ZOSMA_5G00950

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

SBP

Protein Properties

Length: 986aa MW: 109715 Da PI: 6.5079

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma5g00950.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.2	1.5e-40	140	217	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC adl ak+yhrrhkvCe+h+ka++++v + qrfCqqCsrfh l+efDe+krsCrrrL++hn+rrrk+++ Zosma5g00950.1 140 MCQVEGCGADLIGAKDYHRRHKVCETHAKASKAIVGNAVQRFCQQCSRFHLLQEFDEGKRSCRRRLDGHNKRRRKAHP 217 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.8E-33	135	202	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.624	138	215	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-36	140	219	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.4E-30	141	214	IPR004333	Transcription factor, SBP-box
CDD	cd00204	9.80E-8	758	884	No hit	No description
SuperFamily	SSF48403	9.12E-7	787	885	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.747	788	846	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.4E-6	788	884	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.656	825	846	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MDSQRLNGNG KKVMEWDLND WNWNGDLFLA TPVNASPPGC GNKRSFPSIL TTEVGLSTST 60 PSCSDETVHH GVNDKERYEL EEKRRKVIFV DDDEPVLEVS SLALKLGGIV HPKENEVING 120 NRIDNKSGKI QTPGGSSRGM CQVEGCGADL IGAKDYHRRH KVCETHAKAS KAIVGNAVQR 180 FCQQCSRFHL LQEFDEGKRS CRRRLDGHNK RRRKAHPDVV CTVPENPLTD AWSSSYLLIS 240 LLRILSNLQS KNTEPLNDQD LLTHFLKNLA SLAGSSDGKN LSSLMQACQD PLKVANSTGF 300 SSVVAEAEAA AAAPSNDVAL QESFRPFCFN SRSNPVTEVE EVNNLHKTST NESINPALIT 360 ELTGKRSIAK FFPESTINGV QKTQMVKLKS FDLNDAYNVE EEDIEIPEEV VAPRASLLNS 420 HLYMIQESHQ STSPPQTSGN SDSTSVQSFV SSNGDAKGRT DKIIFKLFGK DPKDLSPFIR 480 AQMFNWLSNT PSEIESYIKP GCIILTVYLC LSESYWLELC HNLSSSLKML LDLDSNGFWR 540 TGWMYVRVRN QMAFIYNGQL LLNSPYLGVS DHFTISRISP IAVSPSKTIT FRVNGFGSSL 600 SSARLFCAFE GKYLAQETTS SLVSSNGDVN SLNNGHGYLS FSCSIPDAVG RGFIEIEDES 660 LSSSFFPYII AEKEICSEIC MLEDTLEFDT HTDSTDISSE KLNNRSEALE FLHEMGWLLR 720 RSQLRSRTEE ICPGSDTFSI KRFKCVIEFG MKHEWRAVVK KLLDLLFGGV VDLSGCSIQL 780 VLGELALLHF AVQINSQPIV DLLLNYSKNE HKGILFRPDM VAIDTGLTPL HMAASRDDTE 840 AVLDALTDDP GQVGISAWKT IRDITNYTPE DYARAKNHES YLRLVDKKIT QKSNSSSTHV 900 IVDIPMSVFD IKKGNTPYCQ TCNQQQLKYM RKIQRRSLLI YKPAILSMVG IAAVCVCLGL 960 LLKGLPEVQY VLSPFRWETT RFGPI*

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MDSQRLNGNG KKVMEWDLND WNWNGDLFLA TPVNASPPGC GNKRSFPSIL TTEVGLSTST  60
PSCSDETVHH GVNDKERYEL EEKRRKVIFV DDDEPVLEVS SLALKLGGIV HPKENEVING  120
NRIDNKSGKI QTPGGSSRGM CQVEGCGADL IGAKDYHRRH KVCETHAKAS KAIVGNAVQR  180
FCQQCSRFHL LQEFDEGKRS CRRRLDGHNK RRRKAHPDVV CTVPENPLTD AWSSSYLLIS  240
LLRILSNLQS KNTEPLNDQD LLTHFLKNLA SLAGSSDGKN LSSLMQACQD PLKVANSTGF  300
SSVVAEAEAA AAAPSNDVAL QESFRPFCFN SRSNPVTEVE EVNNLHKTST NESINPALIT  360
ELTGKRSIAK FFPESTINGV QKTQMVKLKS FDLNDAYNVE EEDIEIPEEV VAPRASLLNS  420
HLYMIQESHQ STSPPQTSGN SDSTSVQSFV SSNGDAKGRT DKIIFKLFGK DPKDLSPFIR  480
AQMFNWLSNT PSEIESYIKP GCIILTVYLC LSESYWLELC HNLSSSLKML LDLDSNGFWR  540
TGWMYVRVRN QMAFIYNGQL LLNSPYLGVS DHFTISRISP IAVSPSKTIT FRVNGFGSSL  600
SSARLFCAFE GKYLAQETTS SLVSSNGDVN SLNNGHGYLS FSCSIPDAVG RGFIEIEDES  660
LSSSFFPYII AEKEICSEIC MLEDTLEFDT HTDSTDISSE KLNNRSEALE FLHEMGWLLR  720
RSQLRSRTEE ICPGSDTFSI KRFKCVIEFG MKHEWRAVVK KLLDLLFGGV VDLSGCSIQL  780
VLGELALLHF AVQINSQPIV DLLLNYSKNE HKGILFRPDM VAIDTGLTPL HMAASRDDTE  840
AVLDALTDDP GQVGISAWKT IRDITNYTPE DYARAKNHES YLRLVDKKIT QKSNSSSTHV  900
IVDIPMSVFD IKKGNTPYCQ TCNQQQLKYM RKIQRRSLLI YKPAILSMVG IAAVCVCLGL  960
LLKGLPEVQY VLSPFRWETT RFGPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-32	132	214	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941481.1	0.0	squamosa promoter-binding-like protein 6
TrEMBL	A0A0K9NW96	0.0	A0A0K9NW96_ZOSMR; Putative Squamosa promoter-binding protein
STRING	XP_008813721.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Zosma5g00950.1