PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG215300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 887aa    MW: 98951.2 Da    PI: 7.4403
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG215300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP121.93e-38131207278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          Cqv+gC+adls a++yh+rhkvCe+h++++ v ++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+
  Pavir.5KG215300.1.p 131 CQVDGCHADLSGARDYHKRHKVCEAHTRTSLVRIKNIEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQP 207
                          **************************************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-32124192IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.684128205IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-35129208IPR004333Transcription factor, SBP-box
PfamPF031105.3E-29131204IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.9E-5274286IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-5618765IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.29E-6618764IPR020683Ankyrin repeat-containing domain
CDDcd002041.50E-7655763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MEAGFLWKEN GDQAGAARMS GGHKNKSLDW DLNDWRWDAN LFLATPAAAA PSECSSRDRG  60
LSRARGEIDF GVVVDKRRRL SPEEDGSAGC SNNSAVADGD TNHVVSVQRR QSSEEDRPRK  120
GGASSSTPPS CQVDGCHADL SGARDYHKRH KVCEAHTRTS LVRIKNIEHR FCQQCSRFHL  180
LQEFDEGKKS CRSRLAKHNG RRRKGQPQGV VDGNPTNENQ SLSSTLFLLL KQLSGLESGS  240
SSEQINHPNY LVNLLKNLAA IASTQAYQDI LKNANSNLTS NAGNNAANGS TMHELSIRSI  300
PVGSESLAEG PPVKKRVQDF DLNDACIEEV ESRTDKIVFK LFGKEPKDFP VDLREQILNW  360
LSHCPTDMES YIRPGCVILN VYLRLPNWMW DELDDDPAPW IEKLISMSND GFWRTGWMYA  420
RIQECLALSC NGSLMLASPW QPVIGDRLQR LCVTPIAVDC SSTAKFCVQG FNIVQPTTKL  480
LCVFGGKYLI QEETQMLLED TTMQQGPQCL TFSCSFPSTS GRGFIEVEDY DQSSLSVPFV  540
VSDKDVCSEI RMLEHELSLS SFDETSERIG NLMASRSRAL HFLQEIGWLL QRSLMQATSE  600
QRQYCTEGFS VARFRWLLSF AIDQEWCAVV KKLLNTMFRG DIDLAVSSPI EFALGENLLV  660
TAVNKRSKPL VQFLLRYRTR NYAPDSGAID PVQFLFTPDM TGPSNITPLH IAATISDATS  720
VLDALTDDPQ QLGIKAWKNA RDDTGLTPED YAQKRGHISY IQMVQDKIDR RLPKSHVSVA  780
IPSRPSAPDT VRKHASQLKS TDQTTFNVEK SPRSINQPLS CRLCAHQVHQ LAYRPQTARF  840
FSTRPAMLSL VAIAAVCVCV GLIMKSPPHV NSMKPFLWEK IRWGPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-26121204184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.7480.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG215300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819590.10.0squamosa promoter-binding-like protein 1 isoform X1
RefseqXP_025819591.10.0squamosa promoter-binding-like protein 1 isoform X1
SwissprotQ9LGU70.0SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A2S3HWL10.0A0A2S3HWL1_9POAL; Uncharacterized protein
STRINGPavir.Ea01625.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]