PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_5062917C4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 941aa    MW: 103212 Da    PI: 5.8655
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_5062917C4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.7e-40133210178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +CqvegC adls ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Traes_4AL_5062917C4.1 133 ACQVEGCCADLSAAKDYHRRHKVCEMHAKANTAVVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTRP 210
                            5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-33126195IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.291131208IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-37132211IPR004333Transcription factor, SBP-box
PfamPF031105.8E-29134207IPR004333Transcription factor, SBP-box
SuperFamilySSF484034.35E-7721826IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-6723828IPR020683Ankyrin repeat-containing domain
CDDcd002042.75E-8726825No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
GELEQARREK RVFGWDLNDW SWDSERFVAT PVPAAVGNGL SLNSSPSSSE EAGAEVSRNG  60
NVRGDFDKRK RVVVIHDDDE KDEGPVGSSN NVLSLRIGGN SVAGGAVEDG GVNEEDRNGK  120
KIRVQGGSSS GPACQVEGCC ADLSAAKDYH RRHKVCEMHA KANTAVVGNT VQRFCQQCSR  180
FHLLQEFDEG KRSCRRRLAG HNKRRRKTRP ENAVGGTPIE EKVSSYLLLS LLGICANLNS  240
DNAEHLQGQE LLSNLWRNLG NVAKSLDPKE LCKLLETCQS MQNRSNAGTS EAANALVNTA  300
AAEAAGPSNS KAPFANGGEC GQTSSAVVPV QSNATMVAAT ETPACKFRNF DLNDTCNDME  360
GFEDGSNCPS WIRQDSTQSP PQTSGNSDST SAQSLSSSNG DAQCRTDKIV FKLFEKVPSE  420
LPPILRSQIL GWLSSSPTDI ESHIRPGCII LTVYLRLVES SWRELSENMS VYLDKLSSSS  480
ADNFWTSGLV FVMVRRQIAF MHNGQVMLDR PLAPNSHHYC KVLCVSPVAA PYSATVNFRV  540
EGFNLVSSSS RLICSIEGRC IFEEDTAIMA DDAEDEDIEY LNFCCSLPDT RGRGFIEVED  600
SGFSNGFFPF IVAEQNVCSE VCELESTFKS SSLEQPDKDN AMNQALEFLH ELGWLLHRVN  660
IISKHDKVEP PVPAFNLLRF RNLGIFAMER EWCAVTKMLL DLLFDGFVDA GLQSPKEVVL  720
SENLVHSAVR GKSARMVRFL LTYKPNKNLK ETAETYLFRP DARGPSAFTP LHIAASTSDA  780
EDVLDALTDD PGLVGLNAWR NARDEIGFTP EDYARQRGND AYINLVQKKI DRHLGKGHVV  840
LGVPSSMCPG ITDGLKAGDI SLEICKAMPM TTTSAARCNI CSRQAKMYPN SFARTFLYRP  900
AMFTVMGVAV ICVCVGILLH TLPKVYAAPN FRWELLERGA M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-31127207484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478800.0KF447880.1 Triticum aestivum squamosa promoter-binding-like protein 6 (SPL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169994.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A446RFC70.0A0A446RFC7_TRITD; Uncharacterized protein
STRINGTraes_4AL_5062917C4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]