PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P24520_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 961aa MW: 105941 Da PI: 5.2423

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P24520_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.3e-41	121	198	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC adls+ k+yhrrhkvCe+h+ka++++v++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ GSMUA_Achr3P24520_001 121 TCQVEGCGADLSDSKDYHRRHKVCEMHAKASSAVVRNAIQRFCQQCSRFHLLEEFDEGKRSCRRRLAGHNRRRRKTHP 198 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-34	114	183	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.411	119	196	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-38	120	202	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-30	122	195	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS50297	9.834	739	846	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-6	742	848	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.4E-6	743	845	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.47E-8	744	845	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MEARVGSESH QFFAAGTSNL NGIGKKSFEW DLNDWRWDGE LFVASQLNEI PADWFDLGIV 60 ENGKGEAEKR RRIIVVEEDE SYGGSGSLSL KLGGHAFPVM EADLANGNKS KPQGGSSSHP 120 TCQVEGCGAD LSDSKDYHRR HKVCEMHAKA SSAVVRNAIQ RFCQQCSRFH LLEEFDEGKR 180 SCRRRLAGHN RRRRKTHPDV IVNGNSSINE QASGYLLMSL LRVLSNLQCN LYRSIVGTVK 240 PSCTDILLWE CTDVLPVPVP YWTGMCRLHR VVCCGTTNLA DNSEPPQDQE LLTHFLRNLA 300 SLAKSFDPSN LSQLLQASQD PQKFVTAAGT SSEAVITSVP NGVPEQVSGG PLCLTDKINC 360 NPGTCGRQTD HSTIDIPSNG MIVSAEPVID GVRIKDFDLN NTYSETQDCE EGREKPATPL 420 CTEMSSPNCP SCLVQDSHHS SPPQSIGNSD STSNQSQSSS HEDARCRTDR IIFKLFGKDP 480 TDLPLILRTQ ILDWLSNSPT DIESYIRPGC IILTIYLCQA ESAWVQLYDD LSSNLNRLLH 540 NSSDDLWTTG WIFAMVQDRA AFIYDGQVVL DIPLHIKHPN HCKILSVTPI AVSHSTKVKF 600 TVKGFNLSQP TSRLLCSFDG KYLVQETSQS LVEAANSSGG QELSQCLSFS CLLPDVMGRG 660 FIEFEDCGLS NGFLPFIIAE EDVCSEIRML ENAIDVASCD DQFHERTNAE IARNQALDFI 720 NEFGGTVDAG RQSPMELALA ENLLHSAVQM KSKALVELLL RYVPNRTSKD TDPDRFLFRP 780 DMLGPSGITP LHIAASTDDA ENILDALTDD PGQLGIRAWK SAQDSTGFTP EGYALAQGHD 840 SYVRLVQNKI DKQSSPSQVV LNVSGDASDK LVDALKSSKP SVSEISRIWL STKPQPYCNR 900 CSQQLVYPNS VARTMLYRPV MLSLVGIAAV CVCVGLLFKT PPQVFFVCPS FRWELLDYGF 960 I

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MEARVGSESH QFFAAGTSNL NGIGKKSFEW DLNDWRWDGE LFVASQLNEI PADWFDLGIV  60
ENGKGEAEKR RRIIVVEEDE SYGGSGSLSL KLGGHAFPVM EADLANGNKS KPQGGSSSHP  120
TCQVEGCGAD LSDSKDYHRR HKVCEMHAKA SSAVVRNAIQ RFCQQCSRFH LLEEFDEGKR  180
SCRRRLAGHN RRRRKTHPDV IVNGNSSINE QASGYLLMSL LRVLSNLQCN LYRSIVGTVK  240
PSCTDILLWE CTDVLPVPVP YWTGMCRLHR VVCCGTTNLA DNSEPPQDQE LLTHFLRNLA  300
SLAKSFDPSN LSQLLQASQD PQKFVTAAGT SSEAVITSVP NGVPEQVSGG PLCLTDKINC  360
NPGTCGRQTD HSTIDIPSNG MIVSAEPVID GVRIKDFDLN NTYSETQDCE EGREKPATPL  420
CTEMSSPNCP SCLVQDSHHS SPPQSIGNSD STSNQSQSSS HEDARCRTDR IIFKLFGKDP  480
TDLPLILRTQ ILDWLSNSPT DIESYIRPGC IILTIYLCQA ESAWVQLYDD LSSNLNRLLH  540
NSSDDLWTTG WIFAMVQDRA AFIYDGQVVL DIPLHIKHPN HCKILSVTPI AVSHSTKVKF  600
TVKGFNLSQP TSRLLCSFDG KYLVQETSQS LVEAANSSGG QELSQCLSFS CLLPDVMGRG  660
FIEFEDCGLS NGFLPFIIAE EDVCSEIRML ENAIDVASCD DQFHERTNAE IARNQALDFI  720
NEFGGTVDAG RQSPMELALA ENLLHSAVQM KSKALVELLL RYVPNRTSKD TDPDRFLFRP  780
DMLGPSGITP LHIAASTDDA ENILDALTDD PGQLGIRAWK SAQDSTGFTP EGYALAQGHD  840
SYVRLVQNKI DKQSSPSQVV LNVSGDASDK LVDALKSSKP SVSEISRIWL STKPQPYCNR  900
CSQQLVYPNS VARTMLYRPV MLSLVGIAAV CVCVGLLFKT PPQVFFVCPS FRWELLDYGF  960
I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-33	115	195	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	72	KRRRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393147.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
TrEMBL	M0SHG8	0.0	M0SHG8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P24520_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12