PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_3CDCC5DFF.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 960aa    MW: 105325 Da    PI: 5.9222
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_3CDCC5DFF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.93.8e-40152229178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +CqvegC adls ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Traes_5DL_3CDCC5DFF.2 152 ACQVEGCCADLSAAKDYHRRHKVCEMHAKANTAVVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTRP 229
                            5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-33145214IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.291150227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-37151230IPR004333Transcription factor, SBP-box
PfamPF031105.9E-29153226IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.31E-7741845IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-6742847IPR020683Ankyrin repeat-containing domain
CDDcd002041.85E-8745844No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MEAARVGSQS RHLYGGGLGG ELEQARREKR VFGWDLNDWS WDSERFVATP VPAAVGNGLS  60
LNSSPSSSEE AEAEVARNGN GRVDSDKRKR VVVIHDDDNE KDEDPVGNSN NVLSLRIGGN  120
TVAGGVVDGG VNEEDRNGKK IRVQGGSSSG PACQVEGCCA DLSAAKDYHR RHKVCEMHAK  180
ANTAVVGNTV QRFCQQCSRF HLLQEFDEGK RSCRRRLAGH NKRRRKTRPE NAVGGTPIEE  240
KVSSYLLLSL LGICANFNSD NAEHLQGQEL LSNLWRNLGN VAKSLDPKEL CKLLEACQSM  300
QNRSNAGTSE AANALVNTAA AEAAGPSNSK APFANGGECG QTSSAVVPVQ SNATMVATTE  360
TPACKFRNFD LNDTCNDMEG FEDGSNCPSW IRQDSTQSPP QTSGNSDSTS AQSLSSSNGD  420
AQCRTDKIVF KLFEKVPSEL PPILRSQILG WLSSSPTDIE SHIRPGCIIL TVYLRLVESS  480
WRELSENMSV YLDKLSSSSA DNFWTSGLVF VMVRHQIAFM HNGQVMLDRP LAPNSHHYCK  540
VLCISPVAAP YSATVNFRVE GFNLVSSSSR LICSIEGRCI FEEDTAIMAD DAEDEDIEYL  600
NFCCSLPDTR GRGFIEVEDS GFSNGFFPFI VAEQNVCSEV CELESTFKSS SLEQPDKDNA  660
MNQALEFLHE LGWLLHRVNI ISKHDKVESP VPTFNLLRFR NLGIFAMERE WCAVTKMLLD  720
LLFDGFVDAG LQSPKEVLLS ENLVHSAVRG KSARMVRFLL TYKPNKNLKE TAETYLFRPD  780
ARGPSAFTPL HIAAATNDAE DVLDALTDDP GLVGLNAWRN ARDEIGFTPE DYARQRGNDA  840
YINLVQKKID RHLGKGHVVL GVPSSMCPGI TDGVKAGDIS LEICKAMPMT TTSASRCNIC  900
SRQAKMYPNS FARTFLYRPA MFTVMGVAVI CVCVGILLHT LPKVYAAPNF RWELLERGAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-31146226484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478800.0KF447880.1 Triticum aestivum squamosa promoter-binding-like protein 6 (SPL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169994.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A453MDZ50.0A0A453MDZ5_AEGTS; Uncharacterized protein
TrEMBLM8CLD60.0M8CLD6_AEGTA; Squamosa promoter-binding-like protein 6
TrEMBLX5DBQ40.0X5DBQ4_WHEAT; Squamosa promoter-binding-like protein 6
STRINGTraes_5DL_3CDCC5DFF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]