PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1173791g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | SBP | ||||||||
Protein Properties | Length: 241aa MW: 26077.3 Da PI: 8.7484 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 28.2 | 5.1e-09 | 151 | 171 | 2 | 22 |
-SSTT-----TT--HHHHHTT CS SBP 2 CqvegCeadlseakeyhrrhk 22 CqvegC adls++k+yhrrhk PDK_30s1173791g001 151 CQVEGCGADLSNTKDYHRRHK 171 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-8 | 144 | 171 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.54E-8 | 150 | 180 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
METKVGGKRQ QFYGAGTSSG LGKKSLEWDV NGRKWDGNHC VATPLNSVSE DCRNKQLMSD 60 PATGGLSNSS SSCAEETDLG ITGKGKAELE KRRRITVADD DDDDDEPSDG SLTLKLGGHA 120 SELVEADLAN WEGKNGNRSK LAKGNSSRSS CQVEGCGADL SNTKDYHRRH KHHGPLLVVK 180 PKSSMLIQLC FIQGCLLEKW QKLKWPAHFS YLGASPSKVA KVGRKKSQFL LTCISPVTSG 240 N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 94 | KRRRI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790477.1 | 1e-112 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2H3XYJ5 | 1e-111 | A0A2H3XYJ5_PHODC; squamosa promoter-binding-like protein 6 | ||||
STRING | XP_008790476.1 | 1e-111 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1998 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 2e-19 | squamosa promoter-binding protein-like 12 |