PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01026.1.g00140.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 590aa MW: 63261.5 Da PI: 4.9247

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01026.1.g00140.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	109.2	2.6e-34	147	210	1	64
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 +CqvegCeadl+ ak+yhrrhkvCe+h+ka++++v + qrfCqqCsrfh l+efDe+krsCrr Zpz_sc01026.1.g00140.1.sm.mkhc 147 ACQVEGCEADLTAAKDYHRRHKVCEMHAKASTAVVGNAVQRFCQQCSRFHLLEEFDEGKRSCRR 210 5**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-34	140	209	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	26.983	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-32	146	211	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-26	148	211	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MEAAGFGAQS SHLYGVGLSE LDLNRRDKRV FGWDLNEWSW DSERFIATPV PASVPNGLEL 60 NSSPSSSEEA EAEVARNDAV RGDPEKRKRV VVIDDDEAEH QDCGGALSLK IGGDAGGPRT 120 VESGNVNEEE RNGKKIKVQG GSSSGPACQV EGCEADLTAA KDYHRRHKVC EMHAKASTAV 180 VGNAVQRFCQ QCSRFHLLEE FDEGKRSCRR PGNAEQSNGQ ELLSNLLRNL GAIAKSLEPK 240 ELSKLLEACQ NLQNGSNAGT SGTANALANN SAAEAAGPSN SKPLFINGSQ CGQASSSAMP 300 LTIFPYRTEA RACKVKDFDL NDTCNDMEGF ENGHEVPPTP AFTAAGSPNC PSWMQQDSNQ 360 SPPQTSGNSD STSTQSLARS NGDAQVEDSG FSNSFFPFII AEQDTNLFRP DALGPSTITP 420 LHIAASTSDA EDVLDALTDD PGLVGISAWK NARDDTGFTP EDYARQRGND AYLNLVQKKI 480 DKNTSGAHVV LGVPSSICPV GADDMKLGDV SLEICSSMPM AAPMAKCHLC SHQARKYSRS 540 SVRTFLYRPA MLMMMGVAVV CVCVGILLHT MPKVYAAPTF RWELLERGAM

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MEAAGFGAQS SHLYGVGLSE LDLNRRDKRV FGWDLNEWSW DSERFIATPV PASVPNGLEL  60
NSSPSSSEEA EAEVARNDAV RGDPEKRKRV VVIDDDEAEH QDCGGALSLK IGGDAGGPRT  120
VESGNVNEEE RNGKKIKVQG GSSSGPACQV EGCEADLTAA KDYHRRHKVC EMHAKASTAV  180
VGNAVQRFCQ QCSRFHLLEE FDEGKRSCRR PGNAEQSNGQ ELLSNLLRNL GAIAKSLEPK  240
ELSKLLEACQ NLQNGSNAGT SGTANALANN SAAEAAGPSN SKPLFINGSQ CGQASSSAMP  300
LTIFPYRTEA RACKVKDFDL NDTCNDMEGF ENGHEVPPTP AFTAAGSPNC PSWMQQDSNQ  360
SPPQTSGNSD STSTQSLARS NGDAQVEDSG FSNSFFPFII AEQDTNLFRP DALGPSTITP  420
LHIAASTSDA EDVLDALTDD PGLVGISAWK NARDDTGFTP EDYARQRGND AYLNLVQKKI  480
DKNTSGAHVV LGVPSSICPV GADDMKLGDV SLEICSSMPM AAPMAKCHLC SHQARKYSRS  540
SVRTFLYRPA MLMMMGVAVV CVCVGILLHT MPKVYAAPTF RWELLERGAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	3e-25	144	202	2	60	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01026.1.g00140.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466159.1	1e-167	squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	1e-160	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A3Q8ANT3	1e-168	A0A3Q8ANT3_9POAL; Squamosa-promoter binding protein-like protein
STRING	Sb01g002530.1	1e-167	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	2e-38	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]