PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G081127_P01
Common NameZEAMMB73_876821, Zm.4901
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 861aa    MW: 96563.7 Da    PI: 7.5343
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G081127_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP121.53.8e-38111187278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        Cqv+gC+adls a++yh+rhkvCe+h++++vv+++++e+rfCqqCsrfh l+efD++k+sCr+rLa+hn rrrk q+
  GRMZM2G081127_P01 111 CQVDGCQADLSGARDYHKRHKVCEAHTRTTVVCINNVEHRFCQQCSRFHLLHEFDDGKKSCRSRLAQHNGRRRKVQP 187
                        **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-31103172IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.599108185IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-35109189IPR004333Transcription factor, SBP-box
PfamPF031101.5E-28111184IPR004333Transcription factor, SBP-box
SuperFamilySSF484038.7E-7599742IPR020683Ankyrin repeat-containing domain
CDDcd002043.14E-7632741No hitNo description
Gene3DG3DSA:1.25.40.205.6E-6632744IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MKKRRWWFEC EYAGGEGSAS PGYFAPRSTA SPSGFRLCSA APASRIRGEI DFGVVVDKRR  60
RLSPEEDGSG GCSNSAVADG DNSHVVCVQR GRNTEETRPR KGANSSTTPS CQVDGCQADL  120
SGARDYHKRH KVCEAHTRTT VVCINNVEHR FCQQCSRFHL LHEFDDGKKS CRSRLAQHNG  180
RRRKVQPQPA VNGNSMNEDQ SLSSTLFLLL KQLSGLESGS SSEQINHPNS LVNLLKNLAA  240
IASTHAYQDV LKNATSISSN DGNNAANGSI MHEQTIRSIP VRRESLAEEP AVKRRVQDFD  300
LNDSCIEEAE SRTDKIVFKL FGKEPKDFPV DLREQILNWL SHYPTDMESY IRPGCVILTI  360
YLHLPNWMWD EFNDDPASWI ENLISLSNDG FWRTGWLYAR VQDCLTLSCN GSLMFASPWQ  420
PVIGDKHQRL CVTPIAVDCS SSVKFSVKGF NIVQPTTKLL CVFDEKYLIQ EETQMLLEDS  480
TMQQGPQCLT FSCSFPCTSG RGFIEIEDYD QSSLSVPFVV TDKDVCSEIR MLEHGLDLVS  540
FDQTSKRIDD LMIYRSRALH FLHEIGWLLQ RSHVRATSEQ RQYCPDRFPV ARFRWLLSFA  600
VDQEWCAVLR KLLNTMFQGD IDVLSPIEFA LGENLLHTAV KKRSKPLVEF LLRYTTTNIA  660
PVGGGDGAPV QFLFTPAMTE LSNITPLHIA ATISDAIGVL DALTDDPQQL GIKAWKNARD  720
ATGFTPEEYA AKRGNISYIQ MVQDKIDRRV TRAHVSVTIP STIDTVGKHG SRMKPADQIT  780
FGVEKKQLSI NQTLSCRQCV QQAQQLAFHP RTNRFLSNRT AMLSLVSIAA VCVCVGLIMK  840
SLPQVGCMKP FLWDNIRWGP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-24103184384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.49010.0ear| embryo| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G081127
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G081127_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9431001e-41EU943100.1 Zea mays clone 1560552 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349187.10.0SBP-transcription factor 9
RefseqXP_008655451.10.0squamosa promoter-binding-like protein 1
SwissprotQ9LGU70.0SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A1D6FAL80.0A0A1D6FAL8_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
TrEMBLA0A3L6DSV10.0A0A3L6DSV1_MAIZE; Squamosa promoter-binding-like protein 1
STRINGGRMZM2G081127_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-177squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]