PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G133646_P01
Common NameLOC103650076
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 881aa    MW: 98614.9 Da    PI: 7.4614
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G133646_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.47.5e-37127203278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        Cqv+gC+adls a++yh+rhkvCe+h++++vv+++++e+rfCqqCsrf  l+efDe+k+sCr+rLa+hn rrrk q+
  GRMZM2G133646_P01 127 CQVDGCHADLSGARDYHKRHKVCEAHTRTTVVCIKNVEHRFCQQCSRFQLLQEFDEGKKSCRSRLAQHNGRRRKVQP 203
                        **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-30119188IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.966124201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-34125206IPR004333Transcription factor, SBP-box
PfamPF031107.6E-28127200IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.7E-4618762IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.75E-6639761IPR020683Ankyrin repeat-containing domain
CDDcd002041.52E-5652761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MEASFLRKDG GDQASAATMS GEHRNKGLDW DLNDWRWDAN LFLATPAAIV PSECSSRKLS  60
RAQGEIDFGV VVDKRRRLSP EEDGSAGCSN SGVADGDNNH VVPAQRGRSS EEETPRKGAS  120
SSTTPSCQVD GCHADLSGAR DYHKRHKVCE AHTRTTVVCI KNVEHRFCQQ CSRFQLLQEF  180
DEGKKSCRSR LAQHNGRRRK VQPQTVVNGN SMSENQSLSN TSILLLKQLS RLESGSSSEP  240
INHPNSLVNL LKNLAAIAST QSYQDILKNA NSNSILSNAG NNAANGSTVH EQTIRSIPIR  300
GESLAEEPPV KRRVHDFDLN DACFEEVESR TDKIVFKLFG KEPKDFPVDL REQIQHWLSH  360
YPTDMESYIR PGCVILTIYL RLPNWMWDEL DDDPASWIEK LISISNDGLW RKGWLYARVQ  420
DCLTLSYNGS LMFASPWQLV IGDKHQRLCV TPIAVACSSS VKFSVKGFNI VQPTTKLLCV  480
FGDKYLIQEE TQMLLEDSTV QQGPQCLTFS CSFSCTSGRG FIEVEDYDQS SLCVPFVVAD  540
KDVCSEIRML EHGLNLISFD ETSERIDDLM AYRNRSLHFL HEIGWLLQRS HVRATSEQPQ  600
YCPDRFPVER FRWLLSFAVD QEWCAVLRKL LNTMFQGDID LDVPSPIEFA LGENVLLTAV  660
KKRSKPLVEF LLRYTATDYA PVGSGAGAPV QFLFTPAMTG LSNITPLHIA ATISDATGVL  720
DALTDDPRQL GIKAWKNARD ATGFTPEEYA RKRGHISYIQ LVQDKIDRRV SRAHVSVTIP  780
STIDTAGKHA SRLKPADQIT FGVEKKQRGM NQTLSCRQCV QQVQQLAFHS RTNRFLSNRP  840
AMLSLVAIAA VCVCVGLIMK SLPQVGGMRP FLWDKIRWGP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-24119200384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.49010.0ear| embryo| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G133646
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G133646_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405796.10.0squamosa promoter-binding-like protein 1
SwissprotQ9LGU70.0SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A1D6MRF80.0A0A1D6MRF8_MAIZE; Squamosa promoter-binding-like protein 8
STRINGGRMZM2G133646_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]