PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538961.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 791aa MW: 87832.9 Da PI: 8.613

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538961.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	46.3	1.1e-14	175	206	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l+efDe+k+sCr+rLa+hn+rrrk q KN538961.1_FGP003 175 VRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQV 206 59***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.5E-6	101	127	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	14.768	104	204	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.4E-6	105	128	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.72E-11	175	207	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.7E-7	176	203	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.21E-5	522	671	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	8.4E-4	565	673	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.96E-4	604	669	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRDEGEIDF GVVDKRRRVS 60 PEDDDGEECI NAATTNGDDG QIADQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR 120 DYNKRHKYIY ACDIVLLYLL QNAFNWDSSL ITILLYGSGR KKQVKFYGNY LTCLVRFHFL 180 QEFDEGKKSC RSRLAQHNRR RRKVQVQAGV DVNSLHENHS LSNTLLLLLK QLSGLDSSGP 240 SEQINGPNYL TNLVKNLAAL AGTQRNQDML KNANSAAIAS HTGNYVAKGN SLHDSRPHIP 300 VGTESTAEEP TVERRVQNFD LNDAYVEGDE NRTDKIVFKL FGKEPNDFPS DLRAQILSWL 360 SNCPSDIESY IRPGCIILTI YMRLPNWMWD KLAADPAHWI QKLISLSTDT LWRTGWMYAR 420 VQDYLTLSCN GNLMLASPWQ PAIGNKHQIL LITPIAVACS STANFSVKGL NIAQPTTKLK 480 IMIKAAFHFP LLLLKKMSHI RATSKTPKDC NEGFPAARFR WLLSFAVDRE FCAVIKKLLD 540 TLFQGGVDLD VQSTVEFVLK QDLVFAAVNK RSKPLIDFLL TYTTSSAPMD GTESAAPAQF 600 LFTPDIAGPS DITPLHIAAT YSDTAGVLDA LTDDPQQLGI KAWKNARDAT GLTPEDYARK 660 RGHESYIQMV QNKIDSRLPK AHVSVTISST TSTTDVSEKH ASRSKTTDQT TFDVEKGQPI 720 SAKPPLSCRQ CLPKLAYRHH SSRFLSTRPA VLSLVAIAAV CVCVGLIMQG PPHIGGMRGP 780 FRWNSLRSGP K

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRDEGEIDF GVVDKRRRVS  60
PEDDDGEECI NAATTNGDDG QIADQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR  120
DYNKRHKYIY ACDIVLLYLL QNAFNWDSSL ITILLYGSGR KKQVKFYGNY LTCLVRFHFL  180
QEFDEGKKSC RSRLAQHNRR RRKVQVQAGV DVNSLHENHS LSNTLLLLLK QLSGLDSSGP  240
SEQINGPNYL TNLVKNLAAL AGTQRNQDML KNANSAAIAS HTGNYVAKGN SLHDSRPHIP  300
VGTESTAEEP TVERRVQNFD LNDAYVEGDE NRTDKIVFKL FGKEPNDFPS DLRAQILSWL  360
SNCPSDIESY IRPGCIILTI YMRLPNWMWD KLAADPAHWI QKLISLSTDT LWRTGWMYAR  420
VQDYLTLSCN GNLMLASPWQ PAIGNKHQIL LITPIAVACS STANFSVKGL NIAQPTTKLK  480
IMIKAAFHFP LLLLKKMSHI RATSKTPKDC NEGFPAARFR WLLSFAVDRE FCAVIKKLLD  540
TLFQGGVDLD VQSTVEFVLK QDLVFAAVNK RSKPLIDFLL TYTTSSAPMD GTESAAPAQF  600
LFTPDIAGPS DITPLHIAAT YSDTAGVLDA LTDDPQQLGI KAWKNARDAT GLTPEDYARK  660
RGHESYIQMV QNKIDSRLPK AHVSVTISST TSTTDVSEKH ASRSKTTDQT TFDVEKGQPI  720
SAKPPLSCRQ CLPKLAYRHH SSRFLSTRPA VLSLVAIAAV CVCVGLIMQG PPHIGGMRGP  780
FRWNSLRSGP K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	58	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538961.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068471	0.0	AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence.
GenBank	AK072849	0.0	AK072849.1 Oryza sativa Japonica Group cDNA clone:J023142C13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614279.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0D9Y745	0.0	A0A0D9Y745_9ORYZ; Uncharacterized protein
STRING	BRADI2G11240.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	1e-81	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]