PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco023516.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SBP

Protein Properties

Length: 989aa MW: 110773 Da PI: 6.568

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco023516.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119.4	1.7e-37	155	230	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC dl+ea++y rrhkvCevh ka+++lv + ++rfCqqCsrfh l+efD +krsCrrrLa+hnerrrk+ Aco023516.1 155 CQVAGCGGDLTEARDYLRRHKVCEVHYKAKSALVGNDMKRFCQQCSRFHLLQEFDGDKRSCRRRLAGHNERRRKTP 230 *************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-30	148	216	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.975	152	229	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.8E-35	153	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-28	155	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.35E-7	725	868	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.0E-6	729	788	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.23E-7	737	868	No hit	No description
PROSITE profile	PS50297	9.383	762	869	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.0E-6	843	872	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MEAKVGGSVE HQLHCAKTSN GLKKKNFDWD LNDWKWDGSL FTATPLNSAP SDCRNKQLFC 60 VQEAAMQANR STFGPNEIDF GLTQKGNGKL EGKRRRIIVV EEEEEDDESY DQFGSPSLKL 120 GEQSHLVSEA GPAPLEENNE KSAKLQGRNS SGPSCQVAGC GGDLTEARDY LRRHKVCEVH 180 YKAKSALVGN DMKRFCQQCS RFHLLQEFDG DKRSCRRRLA GHNERRRKTP ANPTPNGTSF 240 DGDQNSSYIL LSLLKILSNL ESVNSEQPNN QELLIHLLTN LAGLAGSSDS RNIARLLQAS 300 QENLHKSGSS AGQSSEAANA LPNSYTLLEP NTTVATTAAA SAMPLERTKA GAPVVEKEPG 360 IPSQRTEEAP LQLNRLKNFD LNCTYNDQEH CLEQHTATTA TQQNGSLAYA TWMVKQSGPS 420 QMNGNLDSSS WRSLNSNRND QSRTDKIVFK LFGKDPKDFP LVLHPQISNW LLHCPTEMES 480 YIRPGCIILT LYLRLADSLW EELYHDLTSW MERLLNISSD DFWRTGWVIA RVQHHMAFIY 540 NGMVLLEAPL PSETHNSCKI LSVTPIAVPC SSTVNFTVKG LSLAQSTSRL LCAFDGKYLF 600 EETTQALCNG TNELPECLSF SCSIPDATGR GFIEVEDYDY SSIIFPFIVA EDNICSEIRA 660 LENEINVASY DKLFEEGMGS INTQHEAVKF LHEMGWLLRR SHMQSKSQQI EFHTEVFTPT 720 RFRWLVSFAV NREWCAVVKK LLDVMFHGSI DLDDQTPSEF ALGEDLLHTA VRKKSKPLVE 780 LLLRYRTEAA LKEKTPPGFL FRPDMMGPSN ITPLHVAATI SEAEGVLDAL TNDPQQLGVK 840 AWKNCRDITG FTPEDYARSR GHESYIQLVQ KKIDIQMGKN HIFLGIPSTF VTDASYRKAD 900 GSNYSKQSAF QIDKFKFQPM QQPYCKQCEQ QVFYRPYARR SLLYRPVVFA MTGIAAVCVC 960 VALIMKGPPV VRFIDAPFTW ESLGSGYM*

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MEAKVGGSVE HQLHCAKTSN GLKKKNFDWD LNDWKWDGSL FTATPLNSAP SDCRNKQLFC  60
VQEAAMQANR STFGPNEIDF GLTQKGNGKL EGKRRRIIVV EEEEEDDESY DQFGSPSLKL  120
GEQSHLVSEA GPAPLEENNE KSAKLQGRNS SGPSCQVAGC GGDLTEARDY LRRHKVCEVH  180
YKAKSALVGN DMKRFCQQCS RFHLLQEFDG DKRSCRRRLA GHNERRRKTP ANPTPNGTSF  240
DGDQNSSYIL LSLLKILSNL ESVNSEQPNN QELLIHLLTN LAGLAGSSDS RNIARLLQAS  300
QENLHKSGSS AGQSSEAANA LPNSYTLLEP NTTVATTAAA SAMPLERTKA GAPVVEKEPG  360
IPSQRTEEAP LQLNRLKNFD LNCTYNDQEH CLEQHTATTA TQQNGSLAYA TWMVKQSGPS  420
QMNGNLDSSS WRSLNSNRND QSRTDKIVFK LFGKDPKDFP LVLHPQISNW LLHCPTEMES  480
YIRPGCIILT LYLRLADSLW EELYHDLTSW MERLLNISSD DFWRTGWVIA RVQHHMAFIY  540
NGMVLLEAPL PSETHNSCKI LSVTPIAVPC SSTVNFTVKG LSLAQSTSRL LCAFDGKYLF  600
EETTQALCNG TNELPECLSF SCSIPDATGR GFIEVEDYDY SSIIFPFIVA EDNICSEIRA  660
LENEINVASY DKLFEEGMGS INTQHEAVKF LHEMGWLLRR SHMQSKSQQI EFHTEVFTPT  720
RFRWLVSFAV NREWCAVVKK LLDVMFHGSI DLDDQTPSEF ALGEDLLHTA VRKKSKPLVE  780
LLLRYRTEAA LKEKTPPGFL FRPDMMGPSN ITPLHVAATI SEAEGVLDAL TNDPQQLGVK  840
AWKNCRDITG FTPEDYARSR GHESYIQLVQ KKIDIQMGKN HIFLGIPSTF VTDASYRKAD  900
GSNYSKQSAF QIDKFKFQPM QQPYCKQCEQ QVFYRPYARR SLLYRPVVFA MTGIAAVCVC  960
VALIMKGPPV VRFIDAPFTW ESLGSGYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-27	150	228	2	84	squamosa promoter binding protein-like 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020087499.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A199V925	0.0	A0A199V925_ANACO; Squamosa promoter-binding-like protein 1
STRING	XP_008810336.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Aco023516.1