PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for
Castanea mollissima
Trihelix FamilyPhylogenetic tree for domain ? help Back to Top |
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Subtree rooted at node 64: /----- maker-scaffold08456-augustus-gene-0.5-mRNA-1/415-497 (2) /-100+ | \----- maker-scaffold00304-augustus-gene-0.31-mRNA-1/404-477 (14) /-61-+ | \---------- snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1/98-182 (4) | | /----- maker-scaffold00006-snap-gene-2.47-mRNA-1/437-522 (5) /----------------------99----------------------+ | | | |----- maker-scaffold07754-augustus-gene-0.5-mRNA-1/374-459 (11) | | | | \----57---+----- maker-scaffold00807-augustus-gene-0.24-mRNA-1/482-567 (22) | | | |----- maker-scaffold00051-augustus-gene-1.41-mRNA-1/510-595 (23) | | | \----- augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1/375-460 (29) | | /----------------------------------------- augustus_masked-scaffold05693-abinit-gene-0.3-mRNA-1/142-229 (3) | | | | /----- augustus_masked-scaffold02611-abinit-gene-0.5-mRNA-1/124-208 (12) | | /--------------100-------------+ | | | \----- maker-scaffold00431-snap-gene-0.27-mRNA-1/79-163 (32) | | | | /-100+ |------------------------------------ augustus_masked-scaffold00491-abinit-gene-0.10-mRNA-1/29-112 (15) | | | | | | | | /----- maker-scaffold01482-augustus-gene-0.24-mRNA-1/90-191 (17) | | | | /------100------+ | | | | | \----- maker-scaffold03619-snap-gene-0.23-mRNA-1/176-262 (20) | | | | | | | \-91-+ | /---------- augustus_masked-scaffold07974-abinit-gene-0.0-mRNA-1/21-106 (18) | | | /-97-+ | --99-+ | | | | /-100+ /----- augustus_masked-scaffold05823-abinit-gene-0.0-mRNA-1/80-171 (27) | | | | | | \-76-+ | | | | \--76-+ \----- snap_masked-scaffold20888-abinit-gene-0.3-mRNA-1/11-70 (38) | /--72-+ | /-67-+ | | | | | | | \--------------- maker-scaffold09364-augustus-gene-0.6-mRNA-1/58-141 (36) | | | | | | | | | \-71-+ \-------------------------- snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1/28-117 (28) | | | | | | | \------------------------------- augustus_masked-scaffold01161-abinit-gene-0.4-mRNA-1/41-131 (37) | | | | | | /----- augustus_masked-scaffold00371-abinit-gene-0.6-mRNA-1/120-216 (7) | | | /-90-+ | | | | \----- augustus_masked-scaffold06030-abinit-gene-0.0-mRNA-1/117-216 (25) | /-98-+ \----------------100----------------+ | | | \---------- augustus_masked-scaffold00006-abinit-gene-2.1-mRNA-1/121-217 (34) | | | | | | /----- maker-scaffold01444-snap-gene-0.26-mRNA-1/24-80 (6) | | | /---100---+ | | | | \----- augustus_masked-scaffold00019-abinit-gene-0.5-mRNA-1/39-135 (31) | | | | | | | /--85-+ /----- maker-scaffold04870-augustus-gene-0.13-mRNA-1/40-134 (8) | | | | | /-100+ | | | | | | \----- maker-scaffold08276-snap-gene-0.20-mRNA-1/44-139 (24) \-99-+ \--------------97--------------+ \-55-+ | | \---------- maker-scaffold09288-augustus-gene-0.5-mRNA-1/39-114 (10) | | | \--------------------- maker-scaffold01877-snap-gene-0.19-mRNA-1/214-278 (16) | | /----- maker-scaffold02951-augustus-gene-0.25-mRNA-1/36-118 (33) |-------------------------51------------------------+ | \----- maker-scaffold01594-augustus-gene-0.20-mRNA-1/84-165 (35) | \--------------------------------------------------------- maker-scaffold01669-snap-gene-0.31-mRNA-1/762-842 (39) Root part of tree: /------------------------------------------------------------------- augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1/49-132 (1) | |------------------------------------------------------------------- maker-scaffold00006-snap-gene-2.47-mRNA-1/65-149 (19) | |------------------------------------------------------------------- maker-scaffold07754-augustus-gene-0.5-mRNA-1/54-137 (21) | + /--------------------------------- (64) | | | /-------99-------+ /----------------- maker-scaffold00304-augustus-gene-0.31-mRNA-1/112-197 (9) | | \------100------+ | | \----------------- maker-scaffold08456-augustus-gene-0.5-mRNA-1/120-205 (13) \-------61-------+ | /----------------- maker-scaffold00807-augustus-gene-0.24-mRNA-1/100-155 (26) \---------------88---------------+ \----------------- maker-scaffold00051-augustus-gene-1.41-mRNA-1/96-180 (30) |
Phylogenetic tree for protein ? help Back to Top |
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/------------------------------------------------------------------- maker-scaffold04870-augustus-gene-0.13-mRNA-1 (1) | |------------------------------------------------------------------- maker-scaffold08276-snap-gene-0.20-mRNA-1 (10) | | /------- maker-scaffold01444-snap-gene-0.26-mRNA-1 (2) | /-------------------------100------------------------+ | | \------- augustus_masked-scaffold00019-abinit-gene-0.5-mRNA-1 (25) | | | | /------- maker-scaffold01482-augustus-gene-0.24-mRNA-1 (3) | | /-100-+ | | | \------- maker-scaffold03619-snap-gene-0.23-mRNA-1 (32) | | /--94--+ | | | \------------- maker-scaffold09364-augustus-gene-0.6-mRNA-1 (27) | | | | | /--99--+ /------- snap_masked-scaffold20888-abinit-gene-0.3-mRNA-1 (11) | | | | /-100-+ | | | | | \------- augustus_masked-scaffold05823-abinit-gene-0.0-mRNA-1 (19) + | | \--100-+ | | | \------------- augustus_masked-scaffold07974-abinit-gene-0.0-mRNA-1 (26) | | | | | /-100-+ /------- augustus_masked-scaffold00491-abinit-gene-0.10-mRNA-1 (4) | | | |--------100--------+ | | | | \------- augustus_masked-scaffold05693-abinit-gene-0.3-mRNA-1 (21) | | | | | | | | /------- augustus_masked-scaffold01161-abinit-gene-0.4-mRNA-1 (8) | | /--100-+ \---------93--------+ | | | | \------- snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1 (24) | | | | | | | | /------- augustus_masked-scaffold02611-abinit-gene-0.5-mRNA-1 (28) | | | \-----------100-----------+ | | /--99--+ \------- maker-scaffold00431-snap-gene-0.27-mRNA-1 (31) | | | | | | | | /------- augustus_masked-scaffold06030-abinit-gene-0.0-mRNA-1 (7) | | | | /--88-+ \--100-+ | | | \------- augustus_masked-scaffold00371-abinit-gene-0.6-mRNA-1 (13) | | \------------100-----------+ | | \------------- augustus_masked-scaffold00006-abinit-gene-2.1-mRNA-1 (30) | | | /--96--+ /------- maker-scaffold01594-augustus-gene-0.20-mRNA-1 (5) | | | /------------98-----------+ | | | | \------- maker-scaffold02951-augustus-gene-0.25-mRNA-1 (22) | | | | | | | | /--------------------------- snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1 (6) | | | | | | | | | | /------- maker-scaffold08456-augustus-gene-0.5-mRNA-1 (9) | | \------99-----+ |--------100--------+ | | | | \------- maker-scaffold00304-augustus-gene-0.31-mRNA-1 (20) | | | | | | | | /------- augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1 (14) |--88-+ | | /--96-+ | | \--95-+ | \------- maker-scaffold07754-augustus-gene-0.5-mRNA-1 (16) | | | /--100-+ | | | | \------------- maker-scaffold00006-snap-gene-2.47-mRNA-1 (17) | | |--90--+ | | | \-------------------- maker-scaffold00051-augustus-gene-1.41-mRNA-1 (18) | | | | | |--------------------------- maker-scaffold00807-augustus-gene-0.24-mRNA-1 (15) | | | | | \--------------------------- maker-scaffold01669-snap-gene-0.31-mRNA-1 (29) | | | \------------------------------------------------------ maker-scaffold01877-snap-gene-0.19-mRNA-1 (23) | \------------------------------------------------------------ maker-scaffold09288-augustus-gene-0.5-mRNA-1 (12) |