PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold05823-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Trihelix

Protein Properties

Length: 399aa MW: 43191.6 Da PI: 9.9124

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold05823-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66	8.2e-21	80	171	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkek 53 +W+++e+ aLi+ +re++ +lrrg+lk+++W+ev++ + ++ ++++qC++k augustus_masked-scaffold05823-abinit-gene-0.0-mRNA-1 80 CWSHDETVALIDSYREKWYSLRRGNLKATHWQEVADSVarrcSAASPPKTAVQCRHK 136 7*******************************9999666566777899*** PP trihelix 54 wenlnkrykkikegekkr.tsessstcpyfdqlea 87 +e+l+kry+ + +++++ s+ s++++f++++a augustus_masked-scaffold05823-abinit-gene-0.0-mRNA-1 137 MEKLRKRYRTELQRARSMpVSRFISSWVHFKRMDA 171 *************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.1E-22	79	172	No hit	No description
SMART	SM00595	5.3E-13	88	177	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MAAAATAASS SPVETTASTP PPIPSSPPTA VPLPLPLPLP APPAAQIQAQ PQTPTQTPIQ 60 AQPQAQPQPT AASRRLPPPC WSHDETVALI DSYREKWYSL RRGNLKATHW QEVADSVARR 120 CSAASPPKTA VQCRHKMEKL RKRYRTELQR ARSMPVSRFI SSWVHFKRMD AMEKGPSAKP 180 RVNDSDSDEN DNNNDEGLDV ENDEEEDQDL YEEFKNGGSN MRHMSKFYRN NGIGGSGGGG 240 GGGGGGGGGG GGGGGGGGSG FRIRIPSGVS VAHLGSKFYP KVEPKFNSNP NPSSSSGVSF 300 GARVLRECNT AVRSGLGKRE RERDPVAEMV SAIKVLGDGF VRVEQMKMEM AREIEGMRME 360 MEMKRTEMIL ESQQRIVEAF AKAVSEKKKK PKRIPSPES

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MAAAATAASS SPVETTASTP PPIPSSPPTA VPLPLPLPLP APPAAQIQAQ PQTPTQTPIQ  60
AQPQAQPQPT AASRRLPPPC WSHDETVALI DSYREKWYSL RRGNLKATHW QEVADSVARR  120
CSAASPPKTA VQCRHKMEKL RKRYRTELQR ARSMPVSRFI SSWVHFKRMD AMEKGPSAKP  180
RVNDSDSDEN DNNNDEGLDV ENDEEEDQDL YEEFKNGGSN MRHMSKFYRN NGIGGSGGGG  240
GGGGGGGGGG GGGGGGGGSG FRIRIPSGVS VAHLGSKFYP KVEPKFNSNP NPSSSSGVSF  300
GARVLRECNT AVRSGLGKRE RERDPVAEMV SAIKVLGDGF VRVEQMKMEM AREIEGMRME  360
MEMKRTEMIL ESQQRIVEAF AKAVSEKKKK PKRIPSPES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	258	SGGGGGGGGGGGGGGGGGGGGGGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023880701.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A2N9ET70	1e-167	A0A2N9ET70_FAGSY; Uncharacterized protein
STRING	XP_008343662.1	1e-145	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-75	Trihelix family protein