PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | Trihelix | ||||||||
Protein Properties | Length: 209aa MW: 24573.8 Da PI: 6.532 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.3 | 5.7e-25 | 98 | 182 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkry 61 +W + ev+aLi++r+ +e+++r + +++ Wee+s + g++rs+k+Ckekw+n+nk++ snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1 98 KWLEAEVQALITLRTTLEHKFRPTGSRGSIWEEISVELYNMGYNRSAKKCKEKWDNMNKYF 158 7************************************************************ PP trihelix 62 kkikegekkrtsessstcpyfdqle 86 ++ e+ kk+ + + + c+yf++l+ snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1 159 RRSMESGKKH-AANGKACQYFHDLN 182 *********9.556669*****995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-5 | 90 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.282 | 91 | 155 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.55E-5 | 95 | 157 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 4.07E-22 | 97 | 161 | No hit | No description |
Pfam | PF13837 | 6.8E-20 | 97 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MERQERMHQE LMEVIEKREQ ERRIREEAWR QQEMERMKRE EELRAQEMSR SLALISLIQN 60 ILGDEIQVPQ PLITPCKEED GGEIGMQNEV KCDPNNKKWL EAEVQALITL RTTLEHKFRP 120 TGSRGSIWEE ISVELYNMGY NRSAKKCKEK WDNMNKYFRR SMESGKKHAA NGKACQYFHD 180 LNILYGNGLI NAGNNVKNAN NENEAKSEN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023873934.1 | 1e-127 | trihelix transcription factor GT-2 isoform X1 | ||||
TrEMBL | A0A2N9GR49 | 1e-114 | A0A2N9GR49_FAGSY; Uncharacterized protein | ||||
STRING | XP_004139609.1 | 2e-92 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11112 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 4e-34 | Trihelix family protein |