PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00807-augustus-gene-0.24-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | Trihelix | ||||||||
Protein Properties | Length: 618aa MW: 70339.5 Da PI: 6.517 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.6 | 9e-15 | 100 | 155 | 2 | 62 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 Wt++evlaL+++r++me+++ + We+vs+k++e gf+r++++Ck+k+e+ ++ + maker-scaffold00807-augustus-gene-0.24-mRNA-1 100 WTNEEVLALLRIRSSMENWFPEF-----TWEHVSRKLAELGFRRTAEKCKDKFEEESRFFN 155 ********************998.....9*************************9887665 PP | |||||||
2 | trihelix | 96.9 | 1.8e-30 | 482 | 567 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 rW+++evlaLi++r ++ ++ ++ + k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k maker-scaffold00807-augustus-gene-0.24-mRNA-1 482 RWPRDEVLALINLRCSLYSNGEDkEGTKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRK 545 8****************99999724599************************************ PP trihelix 64 ikegekkrtsessstcpyfdqle 86 +k+ +kkr s +s+tcpyf+ql maker-scaffold00807-augustus-gene-0.24-mRNA-1 546 TKDVNKKR-SLDSRTCPYFHQLS 567 *******8.9999********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 15 | 96 | 153 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.6E-10 | 99 | 159 | No hit | No description |
PROSITE profile | PS50090 | 6.679 | 100 | 151 | IPR017877 | Myb-like domain |
CDD | cd12203 | 4.27E-13 | 100 | 148 | No hit | No description |
SMART | SM00717 | 0.37 | 479 | 542 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.0E-19 | 481 | 567 | No hit | No description |
CDD | cd12203 | 1.07E-24 | 481 | 547 | No hit | No description |
PROSITE profile | PS50090 | 6.679 | 482 | 540 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MFDGVSDQFH QFIAASRATL PLPSPLSFPI HASVSPPTTF PSYDPYIPSH QVPLQPNLLH 60 PLQHQPPTQK HEEKEENNLV PMNLEIERDR SIPEPMDPVW TNEEVLALLR IRSSMENWFP 120 EFTWEHVSRK LAELGFRRTA EKCKDKFEEE SRFFNNNINY SKNYRFLSEL EEIYHNEQNP 180 HQVESAEKNQ RVEKPSDHQQ GEDDKLGQSL EAKSPGDGTV NEKQTHDENN ETDLVEGRSK 240 SNIKKRKRQK NFEMFKGLCE KIVSKMMAQQ EEMHNRLLED MVKRDEEKVA KEEALKKQEM 300 DRMNKELEIM AQEQAIAGDR QATIIEFLKQ FTSSAFAICF EERHVQNSLK VPKSSNSHTP 360 SSSSSIEAQN PNPTCHVNNQ NTVEAFPSST ITQVHQNSCS RSSQGDSITP TLIISKTLAP 420 QNPTSTLSPN TPKVPTSSTL AITSQNPNSL NTQNNSLTPT SISTQKASPN PITNAKDDLG 480 RRWPRDEVLA LINLRCSLYS NGEDKEGTKA PLWERISQGM LELGYKRSAK RCKEKWENIN 540 KYFRKTKDVN KKRSLDSRTC PYFHQLSTLY NQGTLVAPSE GPENRLIEPE NHLALPEVGH 600 IDNSSQGVSS NSTMHVAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 249 | IKKRKRQK |
2 | 243 | 250 | KKRKRQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009768 | 1e-40 | AP009768.1 Lotus japonicus genomic DNA, clone: LjT40E15, TM1928, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023913154.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Swissprot | Q8H181 | 4e-45 | GTL2_ARATH; Trihelix transcription factor GTL2 | ||||
TrEMBL | A0A2N9EI69 | 0.0 | A0A2N9EI69_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0013s03670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 4e-85 | Trihelix family protein |
Publications ? help Back to Top | |||
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