PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00807-augustus-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 618aa    MW: 70339.5 Da    PI: 6.517
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00807-augustus-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.69e-15100155262
                                       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 
                                                    Wt++evlaL+++r++me+++ +       We+vs+k++e gf+r++++Ck+k+e+ ++ + 
  maker-scaffold00807-augustus-gene-0.24-mRNA-1 100 WTNEEVLALLRIRSSMENWFPEF-----TWEHVSRKLAELGFRRTAEKCKDKFEEESRFFN 155
                                                    ********************998.....9*************************9887665 PP
2trihelix96.91.8e-30482567186
                                       trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                                                    rW+++evlaLi++r ++ ++ ++ +  k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k
  maker-scaffold00807-augustus-gene-0.24-mRNA-1 482 RWPRDEVLALINLRCSLYSNGEDkEGTKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRK 545
                                                    8****************99999724599************************************ PP

                                       trihelix  64 ikegekkrtsessstcpyfdqle 86 
                                                    +k+ +kkr s +s+tcpyf+ql 
  maker-scaffold00807-augustus-gene-0.24-mRNA-1 546 TKDVNKKR-SLDSRTCPYFHQLS 567
                                                    *******8.9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171596153IPR001005SANT/Myb domain
PfamPF138372.6E-1099159No hitNo description
PROSITE profilePS500906.679100151IPR017877Myb-like domain
CDDcd122034.27E-13100148No hitNo description
SMARTSM007170.37479542IPR001005SANT/Myb domain
PfamPF138374.0E-19481567No hitNo description
CDDcd122031.07E-24481547No hitNo description
PROSITE profilePS500906.679482540IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MFDGVSDQFH QFIAASRATL PLPSPLSFPI HASVSPPTTF PSYDPYIPSH QVPLQPNLLH  60
PLQHQPPTQK HEEKEENNLV PMNLEIERDR SIPEPMDPVW TNEEVLALLR IRSSMENWFP  120
EFTWEHVSRK LAELGFRRTA EKCKDKFEEE SRFFNNNINY SKNYRFLSEL EEIYHNEQNP  180
HQVESAEKNQ RVEKPSDHQQ GEDDKLGQSL EAKSPGDGTV NEKQTHDENN ETDLVEGRSK  240
SNIKKRKRQK NFEMFKGLCE KIVSKMMAQQ EEMHNRLLED MVKRDEEKVA KEEALKKQEM  300
DRMNKELEIM AQEQAIAGDR QATIIEFLKQ FTSSAFAICF EERHVQNSLK VPKSSNSHTP  360
SSSSSIEAQN PNPTCHVNNQ NTVEAFPSST ITQVHQNSCS RSSQGDSITP TLIISKTLAP  420
QNPTSTLSPN TPKVPTSSTL AITSQNPNSL NTQNNSLTPT SISTQKASPN PITNAKDDLG  480
RRWPRDEVLA LINLRCSLYS NGEDKEGTKA PLWERISQGM LELGYKRSAK RCKEKWENIN  540
KYFRKTKDVN KKRSLDSRTC PYFHQLSTLY NQGTLVAPSE GPENRLIEPE NHLALPEVGH  600
IDNSSQGVSS NSTMHVAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242249IKKRKRQK
2243250KKRKRQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097681e-40AP009768.1 Lotus japonicus genomic DNA, clone: LjT40E15, TM1928, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913154.10.0trihelix transcription factor GTL2
SwissprotQ8H1814e-45GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A2N9EI690.0A0A2N9EI69_FAGSY; Uncharacterized protein
STRINGPOPTR_0013s03670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-85Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]