PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09288-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 335aa    MW: 38706.5 Da    PI: 7.7372
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09288-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.36.2e-1139114279
                                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                                                   Wt +  l L + +  +e + +++ +  ++W+ +++++ +  + r+ +qC+ kw++l+ +y kik+
  maker-scaffold09288-augustus-gene-0.5-mRNA-1  39 WTVKGALILANEYAAVEADCSDALSSYQKWKIIAENCTALDVPRTLNQCRRKWDSLAAEYGKIKK 103
                                                   888888888888999999999******************************************** PP

                                      trihelix  67 gekkrtsessstc 79 
                                                   +e +   +s s +
  maker-scaffold09288-augustus-gene-0.5-mRNA-1 104 WELRS--RSGSYW 114
                                                   **984..444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-942112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAHLTPKKKD MKCKMESEES SQLRASGSRH TRSQAAPEWT VKGALILANE YAAVEADCSD  60
ALSSYQKWKI IAENCTALDV PRTLNQCRRK WDSLAAEYGK IKKWELRSRS GSYWSLESER  120
RRKFGLPEDF DYELFKAVDD FMSARENRSD TEPEIDPEAK AEMADVVEEL GSKRQRRRFT  180
SQKSWLEGKP LKCHIKEEPS RRSAEEKPQK RRLEDPVNSL TEENPQKSCI KGKHQKGHVE  240
EPVENPIEEK PKRSHCKGET RRSHVEEEET ISTEAKEQMM VMKLQENAEL INAIVSENVD  300
FGAANVSNVE DYRTDFRKTS RGQAYCMPQR HCKHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123ERRRKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920880.10.0trihelix transcription factor ASR3 isoform X1
RefseqXP_023920883.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLA0A1Q3B6U16e-88A0A1Q3B6U1_CEPFO; Myb_DNA-bind_4 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-57sequence-specific DNA binding transcription factors