PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold09288-augustus-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | Trihelix | ||||||||
Protein Properties | Length: 335aa MW: 38706.5 Da PI: 7.7372 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 34.3 | 6.2e-11 | 39 | 114 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 Wt + l L + + +e + +++ + ++W+ +++++ + + r+ +qC+ kw++l+ +y kik+ maker-scaffold09288-augustus-gene-0.5-mRNA-1 39 WTVKGALILANEYAAVEADCSDALSSYQKWKIIAENCTALDVPRTLNQCRRKWDSLAAEYGKIKK 103 888888888888999999999******************************************** PP trihelix 67 gekkrtsessstc 79 +e + +s s + maker-scaffold09288-augustus-gene-0.5-mRNA-1 104 WELRS--RSGSYW 114 **984..444455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.2E-9 | 42 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAHLTPKKKD MKCKMESEES SQLRASGSRH TRSQAAPEWT VKGALILANE YAAVEADCSD 60 ALSSYQKWKI IAENCTALDV PRTLNQCRRK WDSLAAEYGK IKKWELRSRS GSYWSLESER 120 RRKFGLPEDF DYELFKAVDD FMSARENRSD TEPEIDPEAK AEMADVVEEL GSKRQRRRFT 180 SQKSWLEGKP LKCHIKEEPS RRSAEEKPQK RRLEDPVNSL TEENPQKSCI KGKHQKGHVE 240 EPVENPIEEK PKRSHCKGET RRSHVEEEET ISTEAKEQMM VMKLQENAEL INAIVSENVD 300 FGAANVSNVE DYRTDFRKTS RGQAYCMPQR HCKHP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 123 | ERRRKF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023920880.1 | 0.0 | trihelix transcription factor ASR3 isoform X1 | ||||
Refseq | XP_023920883.1 | 0.0 | trihelix transcription factor ASR3 isoform X1 | ||||
TrEMBL | A0A1Q3B6U1 | 6e-88 | A0A1Q3B6U1_CEPFO; Myb_DNA-bind_4 domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6732 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 1e-57 | sequence-specific DNA binding transcription factors |