PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09364-augustus-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 345aa    MW: 38117.2 Da    PI: 10.3292
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09364-augustus-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.36.2e-1658141186
                                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkry 61 
                                                   +W++  v  L+ea+++++   +r+klk+++We+v++++     +++  ++++qCk+k+e+++kry
  maker-scaffold09364-augustus-gene-0.6-mRNA-1  58 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARHVssrgNSTKSPKTQTQCKNKIESMKKRY 122
                                                   5*************************************65555555667888************* PP

                                      trihelix  62 kkikegekkrtsessstcpyfdqle 86 
                                                   + + +++        s++p++ +l+
  maker-scaffold09364-augustus-gene-0.6-mRNA-1 123 RSESATADA------SSWPLYPRLD 141
                                                   ***999986......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-2056141No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDHKEINKEN PSLLSNHTST TTTTTTTIKE DSPRKPFASG GGSGVVVGGS SDRLKRDEWS  60
EGAVSSLLEA YESKWVLRNR AKLKGHDWED VARHVSSRGN STKSPKTQTQ CKNKIESMKK  120
RYRSESATAD ASSWPLYPRL DLLLRGSGPV QAPQPPPPPP PPPPPPVNPP LMLLEPSPVV  180
VLQPQPAAAA APAPPQVGVT QNSHGSNGVD RLAKEDGVGT KLSDQVSDKN HLETDSSTPA  240
LYNSDKDKLR SKKMKMKMEK KKRRRREELE IAESIRWLAE VVVRSEQTRM DTMREIERMR  300
VEAEAKRGEM DLKRTEILAN TQLEIARLFA GIGKGVDSSL RIGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251262KKMKMKMEKKKR
2259264KKKRRR
3259265KKKRRRR
4260265KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899042.10.0trihelix transcription factor ASIL2
TrEMBLA0A2N9HTC71e-167A0A2N9HTC7_FAGSY; Uncharacterized protein
STRINGXP_010067722.11e-150(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-100sequence-specific DNA binding transcription factors