PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06030-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 488aa    MW: 55924.8 Da    PI: 6.2609
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06030-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.25.4e-24117216186
                                              trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergfe 44 
                                                           +Wt+ +v++Li a+ +++++ + +              +kk++W++vs++m+e+g+ 
  augustus_masked-scaffold06030-abinit-gene-0.0-mRNA-1 117 KWTDTMVRLLIMAVYYIGDEAGPEGtdpnakkkssgllQKKGKWKSVSRAMMEKGYY 173
                                                           7**************99988885433556677888999******************* PP

                                              trihelix  45 rspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                                                           +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++++ ++
  augustus_masked-scaffold06030-abinit-gene-0.0-mRNA-1 174 VSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLETMD 216
                                                           ***************************559*******999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-22115241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEPNVLGGGM FSNIGSGMLG LELPLHQHQQ QQKQQQQQNA TNTQNSHHLN HHTQMLPYPH  60
NNDPDHHPPQ QSLKFPFAQK AKQPISLSDE EDPAGFGADD NNSGDAKRKN SPWQRMKWTD  120
TMVRLLIMAV YYIGDEAGPE GTDPNAKKKS SGLLQKKGKW KSVSRAMMEK GYYVSPQQCE  180
DKFNDLNKRY KRVNDILGKG TACRVVENQS LLETMDLSPK MKEEVRKLLN SKHLFFREMC  240
AYHNSCGHGV VNQSPEVATE PSNSHVQHQQ TQQQRCFHSS ENAVMGTNLS EGSKMVKGGS  300
GEEDEEDDDD DDDSDEDEDE DEDEEDQGGS RGHSGHGALH EDEDDNEERS SSRNKRARKG  360
VFSNGSAQLM QQLRCELVSM VQDGAKSPWD KKQWMRTRLL QLEEQQVMYQ CQAFELEKQR  420
LKWVKFSSKK EREMDRAKLE NERRRLENER MVLLVRQKEI ELLDLQHQHH HQQQHSSNKR  480
GDPSSITG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913350.10.0transcription initiation factor TFIID subunit 7-like isoform X1
TrEMBLA0A2I4DFK50.0A0A2I4DFK5_JUGRE; kinesin-related protein 4-like isoform X1
STRINGcassava4.1_006702m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-74sequence-specific DNA binding transcription factors