PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07974-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 280aa    MW: 32417.8 Da    PI: 5.4888
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07974-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.81.8e-2021106286
                                              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCk 51 
                                                           Wt++e+ +Li+a++e++ +l+rg+lk+  Weev+  +       ++++ ++s+ qC+
  augustus_masked-scaffold07974-abinit-gene-0.0-mRNA-1  21 WTHEETVHLIQAYQEKWYSLKRGQLKASNWEEVAVTVsarcgydHSEPSSKSALQCR 77 
                                                           ***********************************999999***9************ PP

                                              trihelix  52 ekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                                                           +k+e+l++ry+ + ++++       s++pyf  ++
  augustus_masked-scaffold07974-abinit-gene-0.0-mRNA-1  78 HKIEKLRQRYRSESQQRRH------SSWPYFPLMD 106
                                                           ************9999986......47****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-1920108No hitNo description
PROSITE profilePS500905.9932084IPR017877Myb-like domain
SMARTSM005950.001628113IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGSPNPNPNP SPSTTSKPLP WTHEETVHLI QAYQEKWYSL KRGQLKASNW EEVAVTVSAR  60
CGYDHSEPSS KSALQCRHKI EKLRQRYRSE SQQRRHSSWP YFPLMDSLHR GPLPISARPP  120
DNHNNNNNNN SNSNIIEDED EDDNESDEEN IYSSRSRSIN YLLRKPTAVN RFAGIADAGK  180
PIRKRHRDFV EEENGGGGGD EEEEEEEEEV EEKGRDAVVS ALAVEIRKFA ERFIGMENMK  240
MEMMKDTERF RMEMENKRME LILDSQKRIL DSIHRTFASP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897867.11e-143trihelix transcription factor ASIL1
TrEMBLA0A2N9I7081e-114A0A2N9I708_FAGSY; Uncharacterized protein
STRINGEOX939268e-82(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-40Trihelix family protein