PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07754-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 538aa    MW: 61370.1 Da    PI: 4.9967
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07754-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.22.6e-2954137186
                                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                                                   rW++qe+la++++r++m++++r++++k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++k
  maker-scaffold07754-augustus-gene-0.5-mRNA-1  54 RWPRQETLAMLKIRSDMDDAFRDASSKAPLWEQVSRKLAELGYNRSAKKCKEKFENIYKYHKRTK 118
                                                   8**************************************************************** PP

                                      trihelix  66 egekkrtsessstcpyfdqle 86 
                                                   + +++r   + + +++f+ql+
  maker-scaffold07754-augustus-gene-0.5-mRNA-1 119 DVRSSRP--NGKAYRFFEQLQ 137
                                                   *****84..4456******98 PP
2trihelix101.37.8e-32374459187
                                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                                                   rW+k+ev aLi++r++++ r++++  k+plWee+s +m++ g+ r++k+Ckekwen+nk++k++k
  maker-scaffold07754-augustus-gene-0.5-mRNA-1 374 RWPKDEVEALIKLRTNLDFRYQENGPKAPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKRVK 438
                                                   8**************************************************************** PP

                                      trihelix  66 egekkrtsessstcpyfdqlea 87 
                                                   e++kkr s++s+tcpyf+ql+a
  maker-scaffold07754-augustus-gene-0.5-mRNA-1 439 ESNKKR-SDDSKTCPYFQQLDA 459
                                                   *****8.89999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.2151113IPR001005SANT/Myb domain
CDDcd122031.24E-2253118No hitNo description
PfamPF138373.9E-1953139No hitNo description
PROSITE profilePS500906.82953111IPR017877Myb-like domain
PROSITE profilePS500907.7367431IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.4E-4368430IPR009057Homeodomain-like
SMARTSM007170.0067371433IPR001005SANT/Myb domain
PfamPF138371.2E-21373460No hitNo description
CDDcd122031.08E-23374438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLENSAVPES NTATTGNREN DEGGGSVSVG SGEEERVGGG AEEGGGDRSF GGNRWPRQET  60
LAMLKIRSDM DDAFRDASSK APLWEQVSRK LAELGYNRSA KKCKEKFENI YKYHKRTKDV  120
RSSRPNGKAY RFFEQLQALD GQTQLRSPSP EKIQASLAET TMVVRTVEPR NVVQNAIPRS  180
IIRNGNLAEN YTPTTSSSSK ESEGMRKKKK KLTEYFEDLM KEVIEKQENL QKKFIDVLEK  240
CEQDRIAREE EWKIQELDRI KRERELLVQE RSIAAAKDAA VLAFLKKFSE QASSVQLPEE  300
TIMVTIPVEK FVERQENDNG GNFMDKQEKQ NGDNVLDRQE DDNGGNNLER QENDNGENSI  360
QMSSGRWPQM SSARWPKDEV EALIKLRTNL DFRYQENGPK APLWEEISLA MKKLGYDRNA  420
KRCKEKWENI NKYFKRVKES NKKRSDDSKT CPYFQQLDAL YSGKTKKVEN SVNSGCELKP  480
EELLMHMMSG QEERQRTESL TEDGEGENVN EIEGDKEDED GDNYQVVASD PSSTANLA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926716.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-66TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2N9G9B60.0A0A2N9G9B6_FAGSY; Uncharacterized protein
STRINGcassava4.1_006275m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-113Trihelix family protein