PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold02611-abinit-gene-0.5-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Trihelix

Protein Properties

Length: 359aa MW: 42038.1 Da PI: 4.3111

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold02611-abinit-gene-0.5-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.4	6.7e-12	124	208	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenl 57 W ++ v +L+e+ ++ +l+r++l+ +W v++k+ ++ ++e+ + qC+ +++l augustus_masked-scaffold02611-abinit-gene-0.5-mRNA-1 124 WNEHSVFVLLEVWGDRFLQLGRKSLRSEDWNYVAEKVtEASKMEKDQLQCRTMLDKL 180 ***********************************777899********** PP trihelix 58 nkrykkikegekkrtsessstcpyfdqle 86 +++ykk+++ ++ sss+++yf++++ augustus_masked-scaffold02611-abinit-gene-0.5-mRNA-1 181 KRKYKKERAKVEDY-GLSSSKWVYFKKMD 208 ****999986.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-16	123	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDDIEDDARY PSKPYSLNPY NPPRRHRNPI RNAPFSHPIS NRYEIEEDDD DDDENDVELQ 60 EDLEDEDDEN PDGYYRNLEG DGEFVDRHSK KRKLRNSIPE FEFDFASVPR GSRSSKPLYS 120 GADWNEHSVF VLLEVWGDRF LQLGRKSLRS EDWNYVAEKV TEASKMEKDQ LQCRTMLDKL 180 KRKYKKERAK VEDYGLSSSK WVYFKKMDML MASSPRQECG LACGIDSGEY VFMNTRVYLE 240 RSNGFDEMRD SPGESENEEE EEEGNGFDER GGVRGIGGDG LSYKVLADSI QKFGEIYEKI 300 ESSKRQQMME LEKMRLEFQR ELELQKKQIL ERAQVEIAKM QEEVEDDEDS DASEENLSE

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDDIEDDARY PSKPYSLNPY NPPRRHRNPI RNAPFSHPIS NRYEIEEDDD DDDENDVELQ  60
EDLEDEDDEN PDGYYRNLEG DGEFVDRHSK KRKLRNSIPE FEFDFASVPR GSRSSKPLYS  120
GADWNEHSVF VLLEVWGDRF LQLGRKSLRS EDWNYVAEKV TEASKMEKDQ LQCRTMLDKL  180
KRKYKKERAK VEDYGLSSSK WVYFKKMDML MASSPRQECG LACGIDSGEY VFMNTRVYLE  240
RSNGFDEMRD SPGESENEEE EEEGNGFDER GGVRGIGGDG LSYKVLADSI QKFGEIYEKI  300
ESSKRQQMME LEKMRLEFQR ELELQKKQIL ERAQVEIAKM QEEVEDDEDS DASEENLSE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	2e-45	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023918629.1	0.0	LOW QUALITY PROTEIN: trihelix transcription factor ASIL1
TrEMBL	A0A2N9FYB0	1e-167	A0A2N9FYB0_FAGSY; Uncharacterized protein
STRING	XP_008242605.1	1e-131	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-83	Trihelix family protein