PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08276-snap-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 348aa    MW: 38248.6 Da    PI: 5.0255
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08276-snap-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.21.9e-2744139186
                                   trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenln 58 
                                                rWt+qe+l+Li+++r  e+r r++           + +p+W++vs++++++g++r+p+qC+++w+nl+
  maker-scaffold08276-snap-gene-0.20-mRNA-1  44 RWTRQEILVLIQGKRVAETRARQRGrsaglpfgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 111
                                                8******************9997533567777777********************************* PP

                                   trihelix  59 krykkikegekkrtsessstcpyfdqle 86 
                                                ++ykkike+e++ ++e++s +++ ++l+
  maker-scaffold08276-snap-gene-0.20-mRNA-1 112 GDYKKIKEWESQVKEETESFWVMRNDLR 139
                                                *************9999999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.35344111IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-444110IPR009057Homeodomain-like
PfamPF138376.8E-1344135No hitNo description
Gene3DG3DSA:1.20.1260.107.9E-4272311IPR012347Ferritin-related
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MALEQQLSLA QNPVDGEADG VTNGVEAARP TSFVDGDKTP RLPRWTRQEI LVLIQGKRVA  60
ETRARQRGRS AGLPFGSGQV EPKWASVSSY CKRHGVNRGP VQCRKRWSNL AGDYKKIKEW  120
ESQVKEETES FWVMRNDLRR ERKLPGFFDK EVYDILDSGS GGAPESSIPG LSLALAAPGS  180
AADDTEADAG VLFDSGRTAA AEDGLFSDFE QDESGRSRTP EKEAPPVPKE VPAPTPISEK  240
QYQPVLRSCQ GQGTTNEKQP ASNPEIGSTS QEGRKRKRLA TEEDEETVSL QNQLVDVLEK  300
NAKMLSAQLE SQNVNFQLDR EQRKDDVSSL IGVLNKLADA LGRIADKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875672.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-119ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2N9IRY00.0A0A2N9IRY0_FAGSY; Uncharacterized protein
STRINGXP_002512665.11e-164(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-113Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]