PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01161-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 335aa    MW: 37785.6 Da    PI: 5.2275
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01161-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.3e-1641131186
                                              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCke 52 
                                                           +W+++ + +Li+a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk+
  augustus_masked-scaffold01161-abinit-gene-0.4-mRNA-1  41 CWSEDATSTLIDAWGRRYMELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKN 97 
                                                           7****************************************99999*********** PP

                                              trihelix  53 kwenlnkrykkikegekkrtsessstcpyfdqle 86 
                                                           +++ ++k+yk +k++ ++ + + +s++ +fd+l+
  augustus_masked-scaffold01161-abinit-gene-0.4-mRNA-1  98 RIDTIKKKYKIEKARVSSSNGTLTSSWIFFDRLD 131
                                                           ***************9999888899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2639133No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGDLTETMMP STTPPLPTLA LSAPNAATPQ SSRPLPVRED CWSEDATSTL IDAWGRRYME  60
LNRGNLRQKD WQDVADAVNA LHGHTKKTHR TDVQCKNRID TIKKKYKIEK ARVSSSNGTL  120
TSSWIFFDRL DSLIGSNVTA KKPTSTPVPI QIQHPPSLSQ SPPVGVPLYY KKAMTPSPSN  180
AVVAALPQKR PSPAMDEGFF RRNYSAMAAA AAAAEADDVE DEEDEEEEEE DEEGDVEERE  240
SEEVVVEREG MRRLARAIER FGAVYERVER EKLRQMVELE KQRMQFAKDL EVQRMNMFMD  300
TQVQLERIKH AKRSRSNGQV FDFSLCIGVI AIGFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924686.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A2N9HQC91e-153A0A2N9HQC9_FAGSY; Uncharacterized protein
STRINGEOY279951e-121(Theobroma cacao)
STRINGevm.model.supercontig_7.721e-121(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-56sequence-specific DNA binding transcription factors