PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03619-snap-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 559aa    MW: 60829.5 Da    PI: 6.4699
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03619-snap-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.51.8e-18176262186
                                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkike 66 
                                                +W++  + +L++a++++ ++l+rg+l++ +Weev+  +  r ++ ++s +qCk+k +nl+kryk +++
  maker-scaffold03619-snap-gene-0.23-mRNA-1 176 EWSDAAIACLLDAYTDKFTQLNRGNLRGRDWEEVAVTVseRCEKQTKSVEQCKNKVDNLKKRYKLERQ 243
                                                5*************************************767778899********************* PP

                                   trihelix  67 gekkrtsessstcpyfdqle 86 
                                                +++++   s+s++p+f+++e
  maker-scaffold03619-snap-gene-0.23-mRNA-1 244 RMING-GISVSHWPWFKHME 262
                                                ****9.67778********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-20174264No hitNo description
Gene3DG3DSA:3.40.1160.105.9E-71311552IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.903318553IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.7E-57319552IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042545.06E-109321553No hitNo description
PfamPF006968.7E-23322532IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MASSCDDFSL LDDDHDHDHD HAHAHAHAHH HTHQSNPNPN PSSHHLHQSY APHRFSTRAT  60
TQVHAPPPPP QQAQSIISSA IAASPQGING GEQQEGDEEE EEEDDGEDYN DAGFCSNPFD  120
NGGAEPNRVR VDVRREKRKD RDELSDGANN YGYNKKSKPS GGAGNSGGEY RKDREEWSDA  180
AIACLLDAYT DKFTQLNRGN LRGRDWEEVA VTVSERCEKQ TKSVEQCKNK VDNLKKRYKL  240
ERQRMINGGI SVSHWPWFKH MENIVGNSLP VKAVAGGDDD KGGGSSATTP RQSKRSAIAM  300
PGPVGPINNV KSKSISNPRW RRVVFKVSGV ALAGTGPNNI DPKVVMLIAR EVAIACRLGV  360
EVAIVVGGRN FFCGDTWVTA TGLERCTAYQ IGMMATVMNS VLLQSALEKL GVQTRVQTAF  420
TMLEVAEPYS RQRAIRHLEK GRVVIFGGIG SGFGNPTFST DTAAAVRASE IHAEAVLKGT  480
NVDGVYDCNS RDNNFTFEHI SFSDLTARGA TSMDAVALNY CDENGIPVVV FNLLEPGNIS  540
KALCGEQVGT LIDQSGRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A3e-6032055250279Uridylate kinase
3nwy_B3e-6032055250279Uridylate kinase
3nwy_C3e-6032055250279Uridylate kinase
3nwy_D3e-6032055250279Uridylate kinase
3nwy_E3e-6032055250279Uridylate kinase
3nwy_F3e-6032055250279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4751289e-36AM475128.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048092.27, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913355.10.0uncharacterized protein LOC112024934
TrEMBLA0A2I4DZ140.0A0A2I4DZ14_JUGRE; uncharacterized protein LOC108984787 isoform X1
STRINGXP_008442786.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein