PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08456-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 570aa    MW: 65396.4 Da    PI: 6.5593
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08456-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.79e-30120205187
                                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykki 64 
                                                   rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+
  maker-scaffold08456-augustus-gene-0.5-mRNA-1 120 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKT 184
                                                   8*************************************999************************ PP

                                      trihelix  65 kegekkrtsessstcpyfdqlea 87 
                                                   keg+ +r  ++ +++++f+qlea
  maker-scaffold08456-augustus-gene-0.5-mRNA-1 185 KEGKAGR--QDGKHYRFFRQLEA 205
                                                   *****98..55667*******85 PP
2trihelix575.1e-18415497284
                                      trihelix   2 WtkqevlaLiearremeerlrrg.klkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                                                   W+++e++ L+++r+ me r+r++ +++++lWee++ km+  g+ rs+ + k+kwe +n+  ++ k
  maker-scaffold08456-augustus-gene-0.5-mRNA-1 415 WPESEIMRLMQFRNGMELRFRQSvCSEEALWEEIAGKMACLGYDRSALMYKDKWERINNCQRRSK 479
                                                   *********************8549**************************************** PP

                                      trihelix  66 egekkrtsessstcpyfdq 84 
                                                   eg kkr +e+s++c yf++
  maker-scaffold08456-augustus-gene-0.5-mRNA-1 480 EGYKKR-KENSRSCGYFQN 497
                                                   *****8.78888*****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.085113178IPR017877Myb-like domain
SMARTSM007170.1117180IPR001005SANT/Myb domain
CDDcd122033.99E-20120185No hitNo description
PfamPF138373.1E-20120206No hitNo description
PROSITE profilePS500905.715407472IPR017877Myb-like domain
SMARTSM0071723411474IPR001005SANT/Myb domain
PfamPF138371.5E-10414497No hitNo description
CDDcd122034.42E-19415479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEMEDQYNIA DLRQLMNGPR SHFPAIPEPQ DLFSAHQHRS LTPTSQQHYD MLMLNRHHHQ  60
HQQVPPELLP RGLHDFRADS TSTQAAITTV AATNTATSTP SLSGLDADTG CLGGDAATGR  120
WPRQETLTLL EIRSRLDPKF KEANQKGPLW DEVSRIMSEE HGYQRSGKKC REKFENLYKY  180
YKKTKEGKAG RQDGKHYRFF RQLEALYGEA SNTNSVPESH FAGHGLRFHT IGQNITQANQ  240
DGFQSQKHCD SLSLSNSSEY GTSSSDDNDL STAAAMVEND SGEKRRKRRG RSWKGKIKDF  300
IDSQMRNLME KQEAWLEKLM NTLEQKEQER MLKEEEWRKE EAARIEREHK FWAKERSWIE  360
ARDAALMEAL QKLTGSEVKA SSSEALMAAE IQNQSENQNE DGSEILNNNG KGESWPESEI  420
MRLMQFRNGM ELRFRQSVCS EEALWEEIAG KMACLGYDRS ALMYKDKWER INNCQRRSKE  480
GYKKRKENSR SCGYFQNHES SLYNQGGAYC EMNEQEPETV RLQGNNDGSS PSNSNAGNSV  540
HESCFPFLMA DGENLWENYA LKLNKGNHNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881856.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-148PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2N9FFV10.0A0A2N9FFV1_FAGSY; Uncharacterized protein
STRINGGLYMA19G37660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-115Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]