PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 550aa    MW: 62358.6 Da    PI: 5.8674
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.76.4e-2849132186
                                              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenl 57 
                                                           rW++ e+laL+++r +m+  +r+++lk+plWeevs+k++e g++r++k+Ckek+en+
  augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1  49 RWPRPETLALLKIRLDMDGVFRDSNLKGPLWEEVSRKLAELGYNRNAKKCKEKFENV 105
                                                           8******************************************************** PP

                                              trihelix  58 nkrykkikegekkrtsessstcpyfdqle 86 
                                                            k++k++keg+ ++  ++ +t+++f+ql+
  augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1 106 YKYHKRTKEGRTGK--PEGKTYRFFEQLQ 132
                                                           ************95..55568******98 PP
2trihelix101.47.4e-32375460187
                                              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenl 57 
                                                           rW+k ev aLi +r++++++++++  k+p We++s+ mr+ g++rs+k+Ckekwen+
  augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1 375 RWPKAEVEALIGLRTSVDRNYQENGPKGPMWEDISAGMRRLGYNRSAKRCKEKWENI 431
                                                           8******************************************************** PP

                                              trihelix  58 nkrykkikegekkrtsessstcpyfdqlea 87 
                                                           nk++kk+ke++k r +e+s+tcpyf++l+a
  augustus_masked-scaffold00006-abinit-gene-2.3-mRNA-1 432 NKYFKKVKESNKTR-PEDSKTCPYFQKLDA 460
                                                           ************97.99**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.846108IPR001005SANT/Myb domain
CDDcd122033.29E-2348113No hitNo description
PfamPF138371.5E-1848134No hitNo description
PROSITE profilePS500906.4749106IPR017877Myb-like domain
PROSITE profilePS500907.108368432IPR017877Myb-like domain
SMARTSM007170.12372434IPR001005SANT/Myb domain
CDDcd122035.98E-24374439No hitNo description
PfamPF138378.4E-23374461No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MLRDSEEDTV MVGADHEGDK DGAIGWNSSE EDKGKSDEGG DRITSGGKRW PRPETLALLK  60
IRLDMDGVFR DSNLKGPLWE EVSRKLAELG YNRNAKKCKE KFENVYKYHK RTKEGRTGKP  120
EGKTYRFFEQ LQALEKKHQP SRAMASSVSN TTIPSTANPT IISHKGISKS TTVPSPTNPT  180
IISQSVVPPI PNPTIPPLQA PKPVIPRNPS QSTISGIIFS GNTSTSSSTA SDEELKGRCK  240
KRRKWKDFFK SLAKEVIEKQ EELQLKFLEA IEKHENERIV REDSWRIQEM ARLNREHEML  300
VQERSTAATK DAAVIAFLQK ISNGNNTNLQ SQPMPRLTPP PCLLSSETNS EIQKMDIVRF  360
ENSLTPSPTQ TSSSRWPKAE VEALIGLRTS VDRNYQENGP KGPMWEDISA GMRRLGYNRS  420
AKRCKEKWEN INKYFKKVKE SNKTRPEDSK TCPYFQKLDA LYKEKKKIES SANSGHDMNN  480
LMEPLMVQPE QQWPPQEDNN RQETVTEDIE NVEQNEEDDE NEDVDSDEED DDGGGYEVVI  540
NKPTSVDNGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239243KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878109.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-141TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2N9EKF70.0A0A2N9EKF7_FAGSY; Uncharacterized protein
STRINGPOPTR_0002s06900.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-125Trihelix family protein