PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05693-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 487aa    MW: 52241.9 Da    PI: 9.4406
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05693-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.51.3e-16142229186
                                              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkek 53 
                                                           +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ ++++pk   qCk++
  augustus_masked-scaffold05693-abinit-gene-0.3-mRNA-1 142 CWSESATAVLIDAWGERYLQLSRGNLKQKHWKEVADIVsSREDYRKTPKtdiQCKNR 198
                                                           7*************************************856666666644449**** PP

                                              trihelix  54 wenlnkrykkikegekkrtsessstcpyfdqle 86 
                                                           ++ ++k+yk +k++   +  + ss++p+fd+l+
  augustus_masked-scaffold05693-abinit-gene-0.3-mRNA-1 199 IDTVKKKYKLEKARIATG--GGSSKWPFFDKLD 229
                                                           ***************986..7888*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-26140231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MQQQEAPETG KPKWKIWVRT AHVKQAEVVV EVEEEEEEVE EEMEEDEEIH SPQRSPDSES  60
PASSTPPRPP SNGRITVTVA SAPPQALPTP PQSHSHHHHN HHSNNINNNN TLTLALPIQQ  120
PRSAGSGAGG SSGGGGGGRE DCWSESATAV LIDAWGERYL QLSRGNLKQK HWKEVADIVS  180
SREDYRKTPK TDIQCKNRID TVKKKYKLEK ARIATGGGSS KWPFFDKLDH LIGPTAKIPL  240
AALPKVPVGI PVGNRSSAAA AAAAAAAASQ YSNSQMFNKQ LSNSNSNTKQ KKLELVLRNS  300
GGSGSGSGSV GGSGGGGGQR FQMFKKRGGV ETDSDSELEA EERDSMDSLP PPVMIRTERK  360
RPRMVVMGGR GGGNVERKER GGGGGGGWGN AVRELTQAIL RFGEAYEQAE SAKLQQVVEM  420
EKQRMKFAKE LELQRMQFFM KTQLEISQLK HGGGGGKRGG GGGGGGGVGN ASNHHSNNNN  480
NNSDDSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454462GGKRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150422e-45AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901238.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-108ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2N9EQH31e-129A0A2N9EQH3_FAGSY; Uncharacterized protein
STRINGcassava4.1_009403m1e-117(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-78sequence-specific DNA binding transcription factors