PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01594-augustus-gene-0.20-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 444aa    MW: 50573.8 Da    PI: 6.3688
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01594-augustus-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix864.7e-2784165286
                                       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                                                    W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k
  maker-scaffold01594-augustus-gene-0.20-mRNA-1  84 WVQDETRSLISLRREMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAK 147
                                                    **************************************************************** PP

                                       trihelix  66 egekkrtsessstcpyfdqle 86 
                                                    +++++     s +++y++++e
  maker-scaffold01594-augustus-gene-0.20-mRNA-1 148 HQDRGS---GSAKMSYYKEIE 165
                                                    ****84...556899***997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-574145IPR009057Homeodomain-like
PROSITE profilePS500908.68776140IPR017877Myb-like domain
SMARTSM007176.3E-580142IPR001005SANT/Myb domain
CDDcd122031.69E-2982147No hitNo description
PfamPF138373.1E-2183167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MYLSEKPRPI DLYKEEGARD MMIEVVSNGG GDLGPHHAPQ PHPHAHAHSH HQHQQMILGD  60
SSGGDEDHEV EVEVKAPKKR AETWVQDETR SLISLRREMD GLFNTSKSNK HLWEQISSKM  120
REKGFDRSPT MCTDKWRNLL KEFKKAKHQD RGSGSAKMSY YKEIEEILRD RSKNAQYKSP  180
TPPKVDTYMQ FSDKGTVFEL CFWQNWKNQD ISSTLLGVGI NVFVNPVLVI YGFGVLCSCI  240
EDAGISFGPV EATGRPTLNL ERRLDHDGHP LAITTADAVA ASGVPPWNWR ETPGNGGESQ  300
SYCGRVISVK WGDYTRRIGI DGSTDAIKEA IRCAFRLRTK RAFWLEDEDQ IIRSLDRDMP  360
LGNYMLHLDE GLAIKVCLYD ESDHIPAMHT EDKIFYTEDD YRNFLSQRGW SCLRELDGYR  420
NIDSMDDLRP GAIYRGGAIY RGES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-5078163186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904917.10.0trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A314ZGR10.0A0A314ZGR1_PRUYE; Trihelix transcription factor GT-1-like isoform X2
STRINGGLYMA11G37390.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]