PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01482-augustus-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 483aa    MW: 52082.2 Da    PI: 8.1514
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01482-augustus-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.71.1e-1690191186
                                       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...........rergferspkqCkek 53 
                                                    +W++  + +L+ea++e+ ++l+rg+l++ +Weev++++           +++   +s +qCk+k
  maker-scaffold01482-augustus-gene-0.24-mRNA-1  90 EWSDTAIACLLEAYTEKYNELNRGNLRGRDWEEVAEAVtdrcggggggdKSKATYKSVEQCKNK 153
                                                    5************************************************999************ PP

                                       trihelix  54 wenlnkrykkikegekkr.....tsessstcpyfdqle 86 
                                                    ++nl+kryk + ++++       t +++s++ +f+++e
  maker-scaffold01482-augustus-gene-0.24-mRNA-1 154 IDNLKKRYKVELQRMSAAtgsttTTTTHSHWHWFKKIE 191
                                                    ********977666554411112355667888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-1988193No hitNo description
Gene3DG3DSA:3.40.1160.103.9E-71238476IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.707243477IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.49E-56243476IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.54E-117246477No hitNo description
PfamPF006961.0E-22247456IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MASSDDFPLI DSSSSSPNLH AHTRHDTAAY YSTEAPFNDA ESDPNSRPGG PPGAPTPPKR  60
TASPYNHYKK HKCSNSGESE SESNRKDREE WSDTAIACLL EAYTEKYNEL NRGNLRGRDW  120
EEVAEAVTDR CGGGGGGDKS KATYKSVEQC KNKIDNLKKR YKVELQRMSA ATGSTTTTTT  180
HSHWHWFKKI EAIVGNSGTA NKGGGSDEDR SISHARSPRQ SKRYMSSNAA LANNLKSKPI  240
SNLKWRRVVF KISGTALAGN CQSIDPKVAM QVAKEVASAC RIGVEVAIVV GGRNFFCGDT  300
WVSATGLDRP TAYQIGMMAT VMNSILLQSA LEKLGVQTRV QSAFAMPEIA EPYSRQRAIR  360
HLEKGRVVIF GGVGAGTGNP LFTTDTAAAL RASELNADAV LKGTSVNGVY DFHSGNSNVI  420
LDHISYRDAI SSTITSMDLM AITYCEENGI PVVVFNLLEP GNVSRALCGD QVGTLIDQAG  480
SIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A6e-632374761239Uridylate kinase
3ek5_B6e-632374761239Uridylate kinase
3ek5_C6e-632374761239Uridylate kinase
3ek5_D6e-632374761239Uridylate kinase
3ek5_E6e-632374761239Uridylate kinase
3ek5_F6e-632374761239Uridylate kinase
3ek6_A6e-632374761239Uridylate kinase
3ek6_B6e-632374761239Uridylate kinase
3ek6_C6e-632374761239Uridylate kinase
3ek6_D6e-632374761239Uridylate kinase
3ek6_E6e-632374761239Uridylate kinase
3ek6_F6e-632374761239Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876255.10.0uncharacterized protein LOC111988699
TrEMBLA0A2N9IIN60.0A0A2N9IIN6_FAGSY; Uncharacterized protein
STRINGGLYMA10G34520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-166Trihelix family protein