PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00006-snap-gene-2.47-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 614aa    MW: 68105 Da    PI: 6.0402
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00006-snap-gene-2.47-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix926.1e-2965149187
                                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                                                rW++qe+laL+++r++m+ ++++++ k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++keg+
  maker-scaffold00006-snap-gene-2.47-mRNA-1  65 RWPRQETLALLKIRSDMDVAFKDASVKGPLWEDVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKEGR 132
                                                8******************************************************************* PP

                                   trihelix  69 kkrtsessstcpyfdqlea 87 
                                                 ++  ++ +++++fdqlea
  maker-scaffold00006-snap-gene-2.47-mRNA-1 133 TGK--PDGKNYRFFDQLEA 149
                                                *95..77789*******85 PP
2trihelix102.62.9e-32437522187
                                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                                                rW+k ev+aLi++r++++ +++++  k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++
  maker-scaffold00006-snap-gene-2.47-mRNA-1 437 RWPKVEVQALIKLRTSLDAKYQENGPKGPLWEEISLAMRKLGYNRSSKRCKEKWENINKYFKKVKESN 504
                                                8******************************************************************* PP

                                   trihelix  69 kkrtsessstcpyfdqlea 87 
                                                kkr +e+ +tcpyf+ql+a
  maker-scaffold00006-snap-gene-2.47-mRNA-1 505 KKR-PEDAKTCPYFHQLDA 522
                                                **8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.3E-462124IPR001005SANT/Myb domain
PROSITE profilePS500906.95764122IPR017877Myb-like domain
PfamPF138378.4E-1964149No hitNo description
CDDcd122034.39E-2464129No hitNo description
SMARTSM007174.4E-4434496IPR001005SANT/Myb domain
PROSITE profilePS500907.213436494IPR017877Myb-like domain
PfamPF138372.5E-22436523No hitNo description
CDDcd122039.72E-28436501No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MLAGDSSSSV LGSSADAVAS VATTSAHDVS AAAAEVGGGL GGSTSGEDDK GRGDELSDRS  60
FGGNRWPRQE TLALLKIRSD MDVAFKDASV KGPLWEDVSR KLAELGYNRS AKKCKEKFEN  120
VYKYHKRTKE GRTGKPDGKN YRFFDQLEAF EHHPQIQSPT PPKPPTLTST LAMPLPNLPS  180
IAHQVTVTSA TLHTANVSQG QANIVTQPVI NATTIPSLPP TNPTNTIFPP PPIPQPIAAA  240
AATTTNPSQP TIPSLQNISA DLISNSTDSS STSSDEQLED RRKKKRKWKD FFERLMKEVI  300
EKQEELQKRF LDAIEKRERD RMVREEAWRA QEMTRINRER EILAQERSIA AAKDAAVMAF  360
LQKISEQQNP GQQPHNNLPP PQPTATQPQP QPQPAPLPLP QPVAPAPSTA APHAIVTTLE  420
IHKNDNGGNF TPTSSSRWPK VEVQALIKLR TSLDAKYQEN GPKGPLWEEI SLAMRKLGYN  480
RSSKRCKEKW ENINKYFKKV KESNKKRPED AKTCPYFHQL DALYREKNRY EISPSSQVKP  540
ENSNMVPLMV RPEQQWPPQQ SDAVMEDVES EPMDQNQEEE DDDDDKDGDD EEEDEGGGHY  600
EIVASKPSSM GAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285RRKKKR
2280286RRKKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6101101e-172AB610110.1 Castanea crenata mRNA, microsatellite: PRB123, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848175.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-150TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2N9EKR10.0A0A2N9EKR1_FAGSY; Uncharacterized protein
STRINGXP_006473053.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-103Trihelix family protein