PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01444-snap-gene-0.26-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Trihelix

Protein Properties

Length: 329aa MW: 36495.9 Da PI: 9.325

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01444-snap-gene-0.26-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.1	3e-15	24	80	16	72
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 + e +l+r+k+++p+W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++ + maker-scaffold01444-snap-gene-0.26-mRNA-1 24 SSEVSLGRNKSIEPRWKWVEDYCWRKGCFRSQNQCNDKWDNLMRDYKKVRDYERRIA 80 3444555667******************************************99874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.4E-9	4	77	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MILIDAKKTD DERRTKRSSG GDTSSEVSLG RNKSIEPRWK WVEDYCWRKG CFRSQNQCND 60 KWDNLMRDYK KVRDYERRIA ESGEGTKVER SYWKIERNER KERNLPTNMS PQIYQALVEV 120 VEKKLGANVS QRIVVGTGVP MPVASNPNVG FVMDRPVSLP LVQHHISTTT TTTTTTPPPP 180 TLALPAPPAP TLPPLPSLAA PPALTYSQHM PTVDSDTSEH SDSPAKRRRK GGESGEGTSG 240 TANASSSSHE VGTAISKSAS IIAEALQASE EREERRHREL LSLQERRLEI EESKTEINRQ 300 GINGLVDAIN KLADSIHALA SHKTQSAPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023884946.1	1e-171	uncharacterized protein LOC111997125 isoform X2
TrEMBL	A0A2I4HRK3	1e-137	A0A2I4HRK3_JUGRE; uncharacterized protein LOC109020711 isoform X2
STRING	Gorai.010G171500.1	1e-124	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-48	Trihelix family protein