PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00006-abinit-gene-2.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Trihelix

Protein Properties

Length: 447aa MW: 51562.5 Da PI: 6.5144

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00006-abinit-gene-2.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.9	4.8e-27	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergfers 46 +Wt+++v++Li+a+++++e++++++ +kk++W+++sk+m+erg+++s augustus_masked-scaffold00006-abinit-gene-2.1-mRNA-1 121 KWTDKMVRLLITAVSYIGEDVSSDCgsggrrkfavlQKKGKWKSISKVMAERGYHVS 177 7*******************99888999999999***************** PP trihelix 47 pkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 p+qC++k+++lnkryk+++++ +++ +++++++ +++d + augustus_masked-scaffold00006-abinit-gene-2.1-mRNA-1 178 PQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENPALLDMI 217 ***********************569999988888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.8E-24	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGNLPQGGI IPGGGGSYGG FDLQGSMRVH HQIQHPHTIH QHQNLPRQGS AVHPSIHEGF 60 PLTMGTIQNC DQTIPMVDFN KGERSKNSMS DEDEQSFTEE GVDGHNEANR GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED VSSDCGSGGR RKFAVLQKKG KWKSISKVMA ERGYHVSPQQ 180 CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDMIEYL TEKEKDDVRK ILSSKQLFYE 240 EMCSYHNSNR LHLPHDQALQ RSLQLALKSR DDHDTDDARK HQHDDHDEDD QDMETDDQDD 300 FEENPGLHGD NRGIYGVLGS AKKLRQGLAH EDINIGNPLN SQDYNRSPYS QAQIAQSDMN 360 QALPENMRAA WLQKQWIESR SLHLEEQKLQ IQVEMLELEK QRFKWQRFSK KRDRELEKLR 420 MENERMKLEN ERMALELKRK EMSAGFN

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGNLPQGGI IPGGGGSYGG FDLQGSMRVH HQIQHPHTIH QHQNLPRQGS AVHPSIHEGF  60
PLTMGTIQNC DQTIPMVDFN KGERSKNSMS DEDEQSFTEE GVDGHNEANR GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED VSSDCGSGGR RKFAVLQKKG KWKSISKVMA ERGYHVSPQQ  180
CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDMIEYL TEKEKDDVRK ILSSKQLFYE  240
EMCSYHNSNR LHLPHDQALQ RSLQLALKSR DDHDTDDARK HQHDDHDEDD QDMETDDQDD  300
FEENPGLHGD NRGIYGVLGS AKKLRQGLAH EDINIGNPLN SQDYNRSPYS QAQIAQSDMN  360
QALPENMRAA WLQKQWIESR SLHLEEQKLQ IQVEMLELEK QRFKWQRFSK KRDRELEKLR  420
MENERMKLEN ERMALELKRK EMSAGFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023909448.1	0.0	uncharacterized protein LOC112021108
TrEMBL	A0A2N9EKB6	0.0	A0A2N9EKB6_FAGSY; Uncharacterized protein
STRING	XP_006434454.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-176	sequence-specific DNA binding transcription factors