PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold20888-abinit-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Trihelix

Protein Properties

Length: 319aa MW: 36281.5 Da PI: 10.2967

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold20888-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.1	8.3e-12	11	70	1	62
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkry 61 +Wt++e+ aLi ++++ + + rg+l + We+v+ + ++s++qC++k+e+l+kry snap_masked-scaffold20888-abinit-gene-0.3-mRNA-1 11 CWTHDETIALISSFNDKWLSRSgsRGNLSASEWEAVATDVT----SKSSTQCRHKMEKLRKRY 69 8************99976654489********996....689************* PP trihelix 62 k 62 snap_masked-scaffold20888-abinit-gene-0.3-mRNA-1 70 L 70 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.8E-10	10	69	No hit	No description
PROSITE profile	PS50090	6.063	12	66	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MSTPRRVPPP CWTHDETIAL ISSFNDKWLS RSGSRGNLSA SEWEAVATDV TSKSSTQCRH 60 KMEKLRKRYL GGSFNADHEF YRKSRGGSGV ESLVGQNLVA PQEIRSRSYS TVTDSCSSKL 120 DFDENVGGFP VRTLGERNLV PPGFEQKNSV KLGEKFSPEF KHKHRMDYAI DKRGGNSVNS 180 RISPKNSNFE FKDRNAVRKK REVVGSFAAV VSSIKMLGEE YVKVETMKME MAMEIEKMRM 240 EMEAKRNEVI LESHKLTVEA FLNAKFDRKK KKVKGIGDVI IVFFDMSLSK WHFKPKPPWS 300 PPPPTSFLHA YYREAQAIG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023876728.1	1e-130	trihelix transcription factor ASIL2-like
Refseq	XP_023927222.1	1e-130	trihelix transcription factor ASIL2-like
TrEMBL	A0A2N9F049	4e-84	A0A2N9F049_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-19	Trihelix family protein