PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM3419
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Subtree rooted at node 110: /----- Rsa1.0_03599.1_g00002.1 [Raphanus sativus] (2) /------100------+ | \----- RrC9188_p1 [Raphanus raphanistrum] (35) | | /----- GSBRNA2T00064377001 [Brassica napus] (16) /-75-+ /---100---+ | | | \----- XP_013602805.1 [Brassica oleracea] (26) | | | | \--75-+ /----- GSBRNA2T00129241001 [Brassica napus] (23) | | /-75-+ | | | \----- GSBRNA2T00054078001 [Brassica napus] (28) | \-61-+ | \---------- XP_009115786.1 [Brassica rapa] (61) /-93-+ | | /----- XP_009149316.1 [Brassica rapa] (3) | | /-81-+ | | | \----- XP_013592914.1 [Brassica oleracea] (10) | | /-76-+ | | | | /----- RrC18955_p1 [Raphanus raphanistrum] (14) | | | \-100+ /-100+ \----66----+ \----- Rsa1.0_00240.1_g00001.1 [Raphanus sativus] (30) | | | | | | /----- 676745418 [Sisymbrium irio] (58) | | \----95---+ | | \----- Tp5g11150 [Thellungiella parvula] (63) | | | \------------------------------- Thhalv10010460m [Eutrema salsugineum] (43) | | /---------- Bostr.6864s0138.1.p [Boechera stricta] (7) /-57-+ | | | /-100+ /----- Carubv10017469m [Capsella rubella] (47) | | | \-100+ | | | \----- Cagra.0926s0071.1.p [Capsella grandiflora] (62) | | | | | /-100-+ /----- Csa04g036820.1 [Camelina sativa] (36) | | | | /-100+ | | | | | \----- Csa06g025180.1 [Camelina sativa] (41) /-100+ | | \-100+ | | \------100-----+ \---------- Csa09g058030.1 [Camelina sativa] (57) | | | | | | /----- AT3G51060.1 [Arabidopsis thaliana] (12) | | \------100------+ /-100-+ | \----- 906453 [Arabidopsis lyrata] (55) | | | | | \----------------------------------------- KFK34352.1 [Arabis alpina] (44) | | | \---------------------------------------------- AA13G00019 [Aethionema arabicum] (22) | | /------------------------------- KFK28306.1 [Arabis alpina] (4) | | | | /----- Csa11g104630.1 [Camelina sativa] (5) | | /-85-+ | | | \----- Csa02g076450.1 [Camelina sativa] (40) | | /-100+ | | | \---------- Csa18g042210.1 [Camelina sativa] (48) | | | | | | /----- Cagra.21284s0001.1.p [Capsella grandiflora] (18) | | /-100-+---100---+ /-100+ | | | \----- Carubv10026733m [Capsella rubella] (38) | | /-100+ | | | | | | | \--------------- Bostr.0568s0045.1.p [Boechera stricta] (49) | | | | /-100+ | | | | | | /---------- AT5G66350.1 [Arabidopsis thaliana] (9) | | | | | | | | | | | | \----100---+ /----- 920093 [Arabidopsis lyrata] (50) | | | | | \-100+ | | | | | \----- Araha.1084s0023.1.p [Arabidopsis halleri] (64) | | | | | | | | | | /----- RrC3733_p1 [Raphanus raphanistrum] (6) | | | | | /---100---+ | | | \-100+ | \----- Rsa1.0_00929.1_g00001.1 [Raphanus sativus] (59) | | | | | | | | | /-100-+ /----- GSBRNA2T00081651001 [Brassica napus] (34) | \------100------+ | | | /-100+ /-100+ | | | | | \----- XP_009103540.1 [Brassica rapa] (37) | | | | | \-100+ | | | | | | /----- GSBRNA2T00046209001 [Brassica napus] (45) | | | | | \-100+ | | | \-100+ \----- XP_013595820.1 [Brassica oleracea] (46) | | | | | | | | /----- Tp2g30370 [Thellungiella parvula] (11) | | | | /-74-+ | | | | | \----- 676761510 [Sisymbrium irio] (13) | | | \----100---+ | | | \---------- Thhalv10004509m [Eutrema salsugineum] (15) --68-+ | | | | \------------------------------------ AA8G00090 [Aethionema arabicum] (24) | | | | /----- XP_010557723.1 [Tarenaya hassleriana] (17) | \------------------------100------------------------+ | \----- XP_010550439.1 [Tarenaya hassleriana] (51) | | /----- EcC002532.20 [Eucalyptus camaldulensis] (20) | /-100+ | | \----- Eucgr.F01614.1.p [Eucalyptus grandis] (31) \------------------------100------------------------+ \---------- Neem_1931_f_19 [Azadirachta indica] (54) Root part of tree: /------------------------------------------------------------------- EcC026489.10 [Eucalyptus camaldulensis] (1) | |------------------------------------------------------------------- Eucgr.I02379.1.p [Eucalyptus grandis] (39) | | /--------------------------------------------- (110) | | | | /---------------------- Thecc1EG000274t1 [Theobroma cacao] (8) | | | | | | /------- Gh_A11G1652 [Gossypium hirsutum] (29) | | /---99--+ /---99--+ | | | | | \------- Cotton_A_14689_BGI-A2_v1.0 [Gossypium arboreum] (42) | | | | | + /--98--+ | \--100-+--------------- Gh_D11G1809 [Gossypium hirsutum] (32) | | | | | | | | /--68--+ \--------------- Gorai.007G198100.1 [Gossypium raimondii] (52) | | | | | | | | | | /------- Neem_1898_f_1 [Azadirachta indica] (25) | | | | | /--100--+ | | | | | | \------- Neem_20703_f_1 [Azadirachta indica] (53) | /--100--+ \--100--+ \------100-----+ | | | | | /------- orange1.1g019213m [Citrus sinensis] (27) | | | | \--100--+ | | | | \------- Ciclev10025993m [Citrus clementina] (56) | | | | \--100-+ | \------------------------------------- evm.model.supercontig_6.196 [Carica papaya] (60) | | | \---------------------------------------------------- Eucgr.J02389.1.p [Eucalyptus grandis] (21) | | /------- Eucgr.I02380.1.p [Eucalyptus grandis] (19) \-------------------------100------------------------+ \------- EcC034568.10 [Eucalyptus camaldulensis] (33) |