PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA8G00090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | SRS | ||||||||
Protein Properties | Length: 366aa MW: 38804.8 Da PI: 8.2673 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 227.1 | 3.2e-70 | 138 | 288 | 3 | 152 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkel 100 sg+ sCqdCGnqakkdC h+RCRtCCksrg+dC thvkstWv+aa rrerqqqla+ + +++++ e+ +kr+re+ +k+++l +t++++++ + l AA8G00090 138 SGGLSCQDCGNQAKKDCGHMRCRTCCKSRGLDCPTHVKSTWVSAATRRERQQQLASVRQPQTQTQlnVESVPKRPREQFPAKSTSLVCTRIPTNH-ISGL 236 7889****************************************************999888877768999********************9885.6699 PP DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 +t ++P+evss+avfrcvrvssv+dge+e+aY+tavsigGh+fkGiLydqG+ AA8G00090 237 QTGNFPPEVSSTAVFRCVRVSSVEDGEDEYAYKTAVSIGGHIFKGILYDQGP 288 99*************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.7E-64 | 140 | 288 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.8E-26 | 142 | 184 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.9E-27 | 241 | 288 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MAGFFSLSGG GSGGEGAGAG AGGGRSSQDE HHHQTTNTNL SQPPLTETWL WYRNPNSNPN 60 PNPNPNLPSA YKGTLELWQH HNNQEILFQQ QQQQRLDLYS SAAGLGVGPS NRSQIDITGE 120 TSAGRLMMRS SSSGSGGSGG LSCQDCGNQA KKDCGHMRCR TCCKSRGLDC PTHVKSTWVS 180 AATRRERQQQ LASVRQPQTQ TQLNVESVPK RPREQFPAKS TSLVCTRIPT NHISGLQTGN 240 FPPEVSSTAV FRCVRVSSVE DGEDEYAYKT AVSIGGHIFK GILYDQGPVG SSNNNVVSVA 300 QAPPLNLITA AGASASSSSP NVSCNTGGGV VATTTTTSEY IDPASLYPTP INSFITGTQF 360 FPNPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA8G00090 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280764.1 | 1e-147 | protein SHORT INTERNODES | ||||
Swissprot | Q9XGX0 | 1e-136 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | R0EWR7 | 1e-145 | R0EWR7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280764.1 | 1e-146 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3419 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-120 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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