PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000274t1

Common Name

TCM_000274

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SRS

Protein Properties

Length: 346aa MW: 37269 Da PI: 7.4164

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000274t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	229.1	8.1e-71	114	263	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklss 93 ++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpa+krrerqqql a+++++++++ + +++kr+re+ ++s+l++t+l+ Thecc1EG000274t1 114 GMSCQDCGNQAKKDCPHMRCRTCCKSRGLDCQTHVKSTWVPASKRRERQQQLVALQQQQQQQQqlqlRGENPKRQREN--PTSSSLACTRLPA 204 689***********************************************99999888877565445555555554..7788899999988 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + s le ++P+e++s+avfrcvrvss+dd+++++aYqtav+igGhvfkG+LydqG+e+ Thecc1EG000274t1 205 NAS--GLELGNFPAEMNSPAVFRCVRVSSIDDADDQYAYQTAVNIGGHVFKGLLYDQGPES 263 765..588999**********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-68	114	262	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.9E-27	116	158	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-27	214	261	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAGIFSLGGR GSNSQEDQQN NPPTEIPPES WFWYKNEDIS YKGFELWQQQ ELFQRHNSSS 60 SNNPQDHHQQ QQDLYSSAAG LGVGPSRISI NVSDDSSSRS AFMMMRSSGA GGVGMSCQDC 120 GNQAKKDCPH MRCRTCCKSR GLDCQTHVKS TWVPASKRRE RQQQLVALQQ QQQQQQQLQL 180 RGENPKRQRE NPTSSSLACT RLPANASGLE LGNFPAEMNS PAVFRCVRVS SIDDADDQYA 240 YQTAVNIGGH VFKGLLYDQG PESGYNNMAA AGESSSGGGV QPLNLITAGP TAATNTGTIA 300 ANASGGRVTA ASSSSTAAFL DPSSLYPTPL NTFMAGTQFF PHPRS*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAGIFSLGGR GSNSQEDQQN NPPTEIPPES WFWYKNEDIS YKGFELWQQQ ELFQRHNSSS  60
SNNPQDHHQQ QQDLYSSAAG LGVGPSRISI NVSDDSSSRS AFMMMRSSGA GGVGMSCQDC  120
GNQAKKDCPH MRCRTCCKSR GLDCQTHVKS TWVPASKRRE RQQQLVALQQ QQQQQQQLQL  180
RGENPKRQRE NPTSSSLACT RLPANASGLE LGNFPAEMNS PAVFRCVRVS SIDDADDQYA  240
YQTAVNIGGH VFKGLLYDQG PESGYNNMAA AGESSSGGGV QPLNLITAGP TAATNTGTIA  300
ANASGGRVTA ASSSSTAAFL DPSSLYPTPL NTFMAGTQFF PHPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969933.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	1e-107	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A061DFV6	0.0	A0A061DFV6_THECC; Lateral root primordium protein-related, putative
STRING	EOX90942	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-77	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Thecc1EG000274t1
Entrez Gene	18610831

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]