PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20703_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SRS

Protein Properties

Length: 288aa MW: 32568.3 Da PI: 8.7546

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20703_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	126.1	4.1e-39	179	274	4	99
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 g++sCqdCGnqakkdC h+RCRtCCksrgf+C+th+kstWvpa+krrerqqqla++++++++++ + + +++++++++ s+l++t++++++s + Neem_20703_f_1 179 GGMSCQDCGNQAKKDCPHMRCRTCCKSRGFECQTHIKSTWVPASKRRERQQQLASLQQQQQQQQLQLRGEQNKRQRENPGSSLACTRIPTNSSGT 273 789****************************************************99999996666666666678999******9988765 PP DUF702 99 e 99 Neem_20703_f_1 274 V 274 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-36	180	259	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.3E-27	182	224	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAGFFSLGAA GGRVSTNNNN NNQEDQQNNQ TNEITPDSWF WYKNEDLPYK GFELWQQQAE 60 LLLHQRQQQQ QQQDLYSSVA GFGMGPSRSS INVIGDNSSS RSAFMMIGAE DLPYKGFELW 120 QQQAELLLHQ RQQQQQQQDL YSSVAGFGMG PSRSSINVIG DNSSSRSAFM MVRSTGVGGG 180 MSCQDCGNQA KKDCPHMRCR TCCKSRGFEC QTHIKSTWVP ASKRRERQQQ LASLQQQQQQ 240 QQLQLRGEQN KRQRENPGSS LACTRIPTNS SGTVFVIRFH FFIIFLAL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021685543.1	5e-71	protein SHI RELATED SEQUENCE 1-like isoform X1
Swissprot	K4B6C9	5e-49	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2C9WN11	2e-68	A0A2C9WN11_MANES; Uncharacterized protein
STRING	cassava4.1_032269m	4e-69	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-33	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]