PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g036820.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 475aa MW: 49378.4 Da PI: 7.8022

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g036820.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	73.8	5.3e-23	138	178	3	43
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstW 43 s ++sCqdCGnqakkdCah+RCRtCCksrgf+C th+ Csa04g036820.1 138 SAGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECPTHLWQNH 178 56789*******************************85443 PP
2	DUF702	230.1	3.9e-71	242	389	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s ++sCqdCGnqakkdCah+RCRtCCksrgf+C thv+stWvpaakrrerqqqla+ + +++ + e+ +kr+re+ +++s+l +t+++s++ Csa04g036820.1 242 SAGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECPTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESLPKRHRENLPATSSSLVCTRIPSHS-- 334 56789**************************************************99999999********************9995.. PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le+ ++P+evss+avfrcvrvssv+dgeee+aYqtavsigGh+fkGiLyd+G+ Csa04g036820.1 335 -GLEVGNFPAEVSSPAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDHGPG 389 .78999**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.9E-20	140	191	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-19	142	174	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	3.6E-65	244	388	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-27	246	288	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.7E-27	341	388	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MAGFFSLDGG GGGGGGGGNN QEDHRSNTNP PPPVSEAWLW YRNPNANANA NANANAPSSS 60 NAAALGTLEL WQNHNQQEIM FQHQQQHQQR LDLYSSAAGL GVGPSNHSQF DISGETSTAG 120 AGRAAGLMMI RSGGGGGSAG VSCQDCGNQA KKDCAHMRCR TCCKSRGFEC PTHLWQNHNQ 180 QEIMFQHQQQ HQQRLDLYSS AAGLGVGPSN HSQFDISGET STAGAGRAAG LMMIRSGGGG 240 GSAGVSCQDC GNQAKKDCAH MRCRTCCKSR GFECPTHVRS TWVPAAKRRE RQQQLATVQP 300 QTQLPRGESL PKRHRENLPA TSSSLVCTRI PSHSGLEVGN FPAEVSSPAV FRCVRVSSVE 360 DGEEEFAYQT AVSIGGHIFK GILYDHGPGS SGGGGYNVVA AGESSSGGGG GQQLNLITAG 420 SVTVATASSS TPNLGGGTGS TSAAAVTYID PAALYPTPIN TFMAGTQFFP HPRS*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MAGFFSLDGG GGGGGGGGNN QEDHRSNTNP PPPVSEAWLW YRNPNANANA NANANAPSSS  60
NAAALGTLEL WQNHNQQEIM FQHQQQHQQR LDLYSSAAGL GVGPSNHSQF DISGETSTAG  120
AGRAAGLMMI RSGGGGGSAG VSCQDCGNQA KKDCAHMRCR TCCKSRGFEC PTHLWQNHNQ  180
QEIMFQHQQQ HQQRLDLYSS AAGLGVGPSN HSQFDISGET STAGAGRAAG LMMIRSGGGG  240
GSAGVSCQDC GNQAKKDCAH MRCRTCCKSR GFECPTHVRS TWVPAAKRRE RQQQLATVQP  300
QTQLPRGESL PKRHRENLPA TSSSLVCTRI PSHSGLEVGN FPAEVSSPAV FRCVRVSSVE  360
DGEEEFAYQT AVSIGGHIFK GILYDHGPGS SGGGGYNVVA AGESSSGGGG GQQLNLITAG  420
SVTVATASSS TPNLGGGTGS TSAAAVTYID PAALYPTPIN TFMAGTQFFP HPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g036820.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029509	0.0	BT029509.1 Arabidopsis thaliana At3g51060 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022549732.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	1e-173	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	R0HK22	0.0	R0HK22_9BRAS; Uncharacterized protein
STRING	XP_010503785.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-134	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]