PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC026489.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SRS | ||||||||
Protein Properties | Length: 138aa MW: 14205.6 Da PI: 4.4455 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 77.3 | 4.2e-24 | 6 | 57 | 104 | 154 |
DUF702 104 slPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +lP++vss+avf+cv+vssvdd +e++aYqtav+igGhvf+GiLyd+G+++ EcC026489.10 6 NLPADVSSPAVFQCVKVSSVDDnPHEQFAYQTAVNIGGHVFRGILYDHGPDH 57 69********************56788***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-21 | 6 | 56 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.0E-25 | 7 | 55 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
LELVGNLPAD VSSPAVFQCV KVSSVDDNPH EQFAYQTAVN IGGHVFRGIL YDHGPDHPTY 60 TNVAAGDDSP GGSSGGNELV QPLDLIAAAA TAAASPVANT ASVHVSSAAT PFFDPSSLYP 120 PPLSAYMAGT QFFPHPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029723.1 | 5e-76 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9SD40 | 1e-29 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A059ASL2 | 1e-74 | A0A059ASL2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029723.1 | 2e-75 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3419 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 3e-20 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
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