PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1898_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | SRS | ||||||||
Protein Properties | Length: 342aa MW: 37415.4 Da PI: 6.872 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 231 | 2e-71 | 114 | 262 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 g++sCqdCGnqakkdC h+RCRtCCksrgf+C+th+kstWvpa+krrerqqqla++++++++++ + + +++++++++ s+l++t++++++s Neem_1898_f_1 114 GGMSCQDCGNQAKKDCPHMRCRTCCKSRGFECQTHIKSTWVPASKRRERQQQLASLQQQQQQQQLQLRGEQNKRQRENPGSSLACTRIPTNSS--G 207 789******************************************************999999966666666666789**********99875..5 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +e+ ++P+evs++avfrcvrvss+dd+e+++aYqt+v+igGh+fkG+LydqG+e+ Neem_1898_f_1 208 FEVGNFPAEVSAQAVFRCVRVSSIDDAEDQYAYQTSVNIGGHLFKGLLYDQGIES 262 9999************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.2E-67 | 115 | 261 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.0E-27 | 117 | 159 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.1E-28 | 213 | 260 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MAGFFSLGAA GGRVSTNNNN NNQEDQQNNQ TNEITPDSWF WYKNEDLPYK GFELWQQQAE 60 LLLHQRQQQQ QQQDLYSSVA GFGMGPSRSS INVIGDNSSS RSAFMMVRST GVGGGMSCQD 120 CGNQAKKDCP HMRCRTCCKS RGFECQTHIK STWVPASKRR ERQQQLASLQ QQQQQQQLQL 180 RGEQNKRQRE NPGSSLACTR IPTNSSGFEV GNFPAEVSAQ AVFRCVRVSS IDDAEDQYAY 240 QTSVNIGGHL FKGLLYDQGI ESNYTTSEST PGGDGVQPLN LITAGPINTP PATIAATVSP 300 GDVVTAAPPA AFLDPSTLYP ITPFTTFMAP AGTQFFPSPR SS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017969933.1 | 1e-145 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9XGX0 | 1e-98 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A061DFV6 | 1e-143 | A0A061DFV6_THECC; Lateral root primordium protein-related, putative | ||||
STRING | EOX90942 | 1e-143 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3419 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 5e-82 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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