PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | SRS | ||||||||
Protein Properties | Length: 322aa MW: 34231.8 Da PI: 7.7116 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.4 | 2.2e-69 | 115 | 260 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa +++ +++ +kr+re+ +++s+l +t+l+ ++s XP_010557723.1 115 GGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECQTHVKSTWVPAAKRRERQQQLAAIQQQ-----RQSVPKRQRETLPANSSSLVCTRLPANTSG 204 5789**************************************************998554.....57899********************99866 PP DUF702 98 keletsslPeevsseavfrcvrvssvd.dgeeelaYqtavsigGhvfkGiLydqGlee 154 +e+ ++P+evss+avfrcvrvssvd dge+++aYqtavsigGhvfkGiLyd+G+++ XP_010557723.1 205 --SEVGQFPPEVSSSAVFRCVRVSSVDiDGEDQFAYQTAVSIGGHVFKGILYDHGPDS 260 ..78899********************67**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.8E-64 | 117 | 259 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.2E-27 | 119 | 161 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.3E-25 | 209 | 258 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MAGFFSLGGG GGGSNQDDGA NANPPPVTEA WLWYRNPNAN TPSSNVADIS SSYKGTLELW 60 QNHNQQDIIF HQQQHQRLDL YSSAVGPSGR NQIDMSGQPS AVDGRAALMM LPSGGGGVSC 120 QDCGNQAKKD CAHMRCRTCC KSRGFECQTH VKSTWVPAAK RRERQQQLAA IQQQRQSVPK 180 RQRETLPANS SSLVCTRLPA NTSGSEVGQF PPEVSSSAVF RCVRVSSVDI DGEDQFAYQT 240 AVSIGGHVFK GILYDHGPDS GTATATESSS GGGAQPLNLI TAASSSSLNL GNNGGYIDPS 300 ALYPTPINTF MAGTQFFPNP RS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557723.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557723.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9SD40 | 1e-128 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A087GWV0 | 1e-131 | A0A087GWV0_ARAAL; Uncharacterized protein | ||||
TrEMBL | A0A1J3F6G5 | 1e-131 | A0A1J3F6G5_NOCCA; Protein SHI RELATED SEQUENCE 1 | ||||
STRING | XP_010557723.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3419 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 1e-101 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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