PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14689_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 341aa    MW: 36680.3 Da    PI: 6.2649
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14689_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702230.23.5e-711122583154
                      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsa 85 
                                  g++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrerqqqla++++++ ++ + +++kr+re+   ++s 
  Cotton_A_14689_BGI-A2_v1.0 112 GGGVSCQDCGNQAKKDCLHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLASLQQQQ-QQLRGENPKRQREN--PTSSP 191
                                 5789****************************************************97766.55778888888886..56667 PP

                      DUF702  86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                 l+ t+l+++   + le+ ++P+ev+sea+frcvrvs+++dg++++aYqtav+igGhvfkGiLy+qG+e+
  Cotton_A_14689_BGI-A2_v1.0 192 LAFTRLPTNA--SGLEVGNFPPEVNSEAMFRCVRVSGIEDGDDQYAYQTAVNIGGHVFKGILYNQGPEN 258
                                 7778877765..5699999************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.3E-67114257IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.4E-28116158IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.3E-28209256IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAGFFSLGGR GSNSQEDQRN NPPPTDIQPE SWFWYKNEDA SFKGFELWQQ QEAFQRQYQS  60
IGNNNNNNQQ GQQLQDLYSS AAGLGVGPSR SSINIADDSS SRSAFMMMGG GGGGVSCQDC  120
GNQAKKDCLH MRCRTCCKSR GFDCQTHVKS TWVPASKRRE RQQQLASLQQ QQQQLRGENP  180
KRQRENPTSS PLAFTRLPTN ASGLEVGNFP PEVNSEAMFR CVRVSGIEDG DDQYAYQTAV  240
NIGGHVFKGI LYNQGPENGY NMAAAVGESS SGDGIQQLDL ITAGPTAAAS NAGTVAGNAS  300
CSSVTAAASS STVAFLDPSS LYAAPLNTFM AGTQFFPNPR S
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8899717e-38KT889971.1 Corchorus olitorius cultivar Sudan Green microsatellite JROm630 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677660.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_016677666.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_016677673.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_016677676.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_017629444.10.0PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X2
SwissprotQ9SD401e-109SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A1U8IHV90.0A0A1U8IHV9_GOSHI; protein SHI RELATED SEQUENCE 1-like
STRINGGorai.007G198100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.17e-98Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]