PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14689_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SRS | ||||||||
Protein Properties | Length: 341aa MW: 36680.3 Da PI: 6.2649 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 230.2 | 3.5e-71 | 112 | 258 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsa 85 g++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrerqqqla++++++ ++ + +++kr+re+ ++s Cotton_A_14689_BGI-A2_v1.0 112 GGGVSCQDCGNQAKKDCLHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLASLQQQQ-QQLRGENPKRQREN--PTSSP 191 5789****************************************************97766.55778888888886..56667 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 l+ t+l+++ + le+ ++P+ev+sea+frcvrvs+++dg++++aYqtav+igGhvfkGiLy+qG+e+ Cotton_A_14689_BGI-A2_v1.0 192 LAFTRLPTNA--SGLEVGNFPPEVNSEAMFRCVRVSGIEDGDDQYAYQTAVNIGGHVFKGILYNQGPEN 258 7778877765..5699999************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.3E-67 | 114 | 257 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.4E-28 | 116 | 158 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.3E-28 | 209 | 256 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MAGFFSLGGR GSNSQEDQRN NPPPTDIQPE SWFWYKNEDA SFKGFELWQQ QEAFQRQYQS 60 IGNNNNNNQQ GQQLQDLYSS AAGLGVGPSR SSINIADDSS SRSAFMMMGG GGGGVSCQDC 120 GNQAKKDCLH MRCRTCCKSR GFDCQTHVKS TWVPASKRRE RQQQLASLQQ QQQQLRGENP 180 KRQRENPTSS PLAFTRLPTN ASGLEVGNFP PEVNSEAMFR CVRVSGIEDG DDQYAYQTAV 240 NIGGHVFKGI LYNQGPENGY NMAAAVGESS SGDGIQQLDL ITAGPTAAAS NAGTVAGNAS 300 CSSVTAAASS STVAFLDPSS LYAAPLNTFM AGTQFFPNPR S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00613 | PBM | Transfer from AT3G51060 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT889971 | 7e-38 | KT889971.1 Corchorus olitorius cultivar Sudan Green microsatellite JROm630 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016677660.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_016677666.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_016677673.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_016677676.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_017629444.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X2 | ||||
Swissprot | Q9SD40 | 1e-109 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A1U8IHV9 | 0.0 | A0A1U8IHV9_GOSHI; protein SHI RELATED SEQUENCE 1-like | ||||
STRING | Gorai.007G198100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3419 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 7e-98 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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