PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g058030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 375aa MW: 38383.1 Da PI: 7.5443

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g058030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	231.9	1.1e-71	141	289	2	153
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +sg++sCqdCGnqakkdCah+RCRtCCksrgf+C thv+stWvpaakrrerqqqla+ + +++ + e+ +kr+re+ +++s+l +t+++s++ Csa09g058030.1 141 GSGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECPTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLICTRIPSHS- 234 57899***************************************************99999999********************9985. PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le+ ++P+evss+avfrcvrvssv+dgeee+aYqtavsigGh+fkGiLyd+G+ Csa09g058030.1 235 --GLEVGNFPAEVSSPAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDHGPG 289 ..78999**********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-65	144	288	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-27	146	188	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.7E-27	241	288	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAGFFSLDGG GGGGGGGGGG NNQEDHRSNT NPPPPVSEAW LWYRNPNANA NANANAPSSS 60 NAAALGTLEL WQNHNQQDIM FQHQQQHQQR LDLYSSAAGL GVGPSNHSQF DISGETSTAG 120 AGRAAGLMMI RSGGGGGGGG GSGGVSCQDC GNQAKKDCAH MRCRTCCKSR GFECPTHVRS 180 TWVPAAKRRE RQQQLATVQP QTQLPRGESV PKRHRENLPA TSSSLICTRI PSHSGLEVGN 240 FPAEVSSPAV FRCVRVSSVE DGEEEFAYQT AVSIGGHIFK GILYDHGPGS GGGGGYNVVA 300 AGESSSGGGG AQQLNLITAG SVTVATASSS TPNLGGGIGS TSAAAATYID PAALYPTPIN 360 TFMAGTQFFP HPRS*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAGFFSLDGG GGGGGGGGGG NNQEDHRSNT NPPPPVSEAW LWYRNPNANA NANANAPSSS  60
NAAALGTLEL WQNHNQQDIM FQHQQQHQQR LDLYSSAAGL GVGPSNHSQF DISGETSTAG  120
AGRAAGLMMI RSGGGGGGGG GSGGVSCQDC GNQAKKDCAH MRCRTCCKSR GFECPTHVRS  180
TWVPAAKRRE RQQQLATVQP QTQLPRGESV PKRHRENLPA TSSSLICTRI PSHSGLEVGN  240
FPAEVSSPAV FRCVRVSSVE DGEEEFAYQT AVSIGGHIFK GILYDHGPGS GGGGGYNVVA  300
AGESSSGGGG AQQLNLITAG SVTVATASSS TPNLGGGIGS TSAAAATYID PAALYPTPIN  360
TFMAGTQFFP HPRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	141	SGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g058030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029509	0.0	BT029509.1 Arabidopsis thaliana At3g51060 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010426648.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	0.0	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	R0HK22	0.0	R0HK22_9BRAS; Uncharacterized protein
STRING	XP_010426648.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-160	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]