PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA13G00019
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SRS
Protein Properties Length: 338aa    MW: 35964.6 Da    PI: 8.6459
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA13G00019genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702234.32e-721312853153
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaesk 97 
                 +g++sCqdCGnqakkdCah+RCRtCCksrgf+C thv+stWvpaakrrerq qla+ ++ +++++    +e+ +kr+re+   ++s+l +t+++s++++
  AA13G00019 131 VGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFQCPTHVRSTWVPAAKRRERQLQLATIHHPQTQTQtetrSENVPKRQRENLPPTSSSLVCTRIPSNNNT 229
                 6889*************************************************99988877776666668888999*********************** PP

      DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                 + l + ++P+evss+avfrcvrvssv+dge+e+aYqtav+igGh+fkGiLyd+G+ 
  AA13G00019 230 SGLAIGNFPAEVSSPAVFRCVRVSSVEDGEDEYAYQTAVNIGGHIFKGILYDHGPG 285
                 ******************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.1E-67133284IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.7E-27135177IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-28237284IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAGFFSLGGG GGGGGGGGNS QDQQRTNTTN PPPPVSEAWL WYRNPNPNPP SSSNVAIDKG  60
TLELWQQHHN QQEIIFQQQQ QRLDLYSSAA GLGVGPSNRN QFDISAGGET STGGGVRASG  120
LMMMRSNSSS VGGVSCQDCG NQAKKDCAHM RCRTCCKSRG FQCPTHVRST WVPAAKRRER  180
QLQLATIHHP QTQTQTETRS ENVPKRQREN LPPTSSSLVC TRIPSNNNTS GLAIGNFPAE  240
VSSPAVFRCV RVSSVEDGED EYAYQTAVNI GGHIFKGILY DHGPGTSSAG GGGGGSHQRN  300
LITAATSSGP YNDQAVALYP TPINSFIAGT QFFPNPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA13G00019
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2265103e-31DQ226510.1 Thellungiella halophila clone ThBAC2 hypothetical protein genes, complete cds; transposon En/Spm, complete sequence; transposon Gypsy, complete sequence; and transposon AC-like element, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744650.11e-148protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD401e-137SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A087GWV01e-149A0A087GWV0_ARAAL; Uncharacterized protein
STRINGA0A087GWV01e-149(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-118Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]