PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I02380.1.p

Common Name

EUGRSUZ_I02380, LOC104419685

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 363aa MW: 37613.2 Da PI: 7.5865

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I02380.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	205.6	1.3e-63	139	282	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkl 91 g++sCqdCGnqakkdC h RCRtCCksrgfdC+thvkstWvpaakrrerqqqlaa+++++ +++ + +askr+r++ + Eucgr.I02380.1.p 139 RGGISCQDCGNQAKKDCPHLRCRTCCKSRGFDCSTHVKSTWVPAAKRRERQQQLAALKEHHHQEQrlqlRGEASKRQRDD----RG------- 220 5789**************************************************977665544222222222222222....22....... PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +s+ + ++P+evss+avfrcv+vssvdd +e++aYqtav+igGhvf+GiLyd+G+++ Eucgr.I02380.1.p 221 -RPNSSGLELVGNFPAEVSSPAVFRCVKVSSVDDPDEQFAYQTAVNIGGHVFRGILYDHGPDH 282 .222222334567**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-65	141	281	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.6E-27	143	185	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.6E-26	233	280	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MAGFIPLGGG GGGAARSAAG AGGGGGGGDQ QINHPQATAT AEIPWFYYPR SNVDDVGTSS 60 TYKGLELWHQ NQPQTQQQLH FFSQQQQDLY ASAAGLGVGP SGGGGSGRGS INVFSDESSR 120 SGGGFTTSTS AATTGGGMRG GISCQDCGNQ AKKDCPHLRC RTCCKSRGFD CSTHVKSTWV 180 PAAKRRERQQ QLAALKEHHH QEQRLQLRGE ASKRQRDDRG RPNSSGLELV GNFPAEVSSP 240 AVFRCVKVSS VDDPDEQFAY QTAVNIGGHV FRGILYDHGP DHPSYTNVAA GDSSSGGGGG 300 GGLVQPLDLI AAAATAAASP ITNAESAHVS SATAPFFDSA SLYPPPLSTY MAGTQFFPHP 360 RS*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MAGFIPLGGG GGGAARSAAG AGGGGGGGDQ QINHPQATAT AEIPWFYYPR SNVDDVGTSS  60
TYKGLELWHQ NQPQTQQQLH FFSQQQQDLY ASAAGLGVGP SGGGGSGRGS INVFSDESSR  120
SGGGFTTSTS AATTGGGMRG GISCQDCGNQ AKKDCPHLRC RTCCKSRGFD CSTHVKSTWV  180
PAAKRRERQQ QLAALKEHHH QEQRLQLRGE ASKRQRDDRG RPNSSGLELV GNFPAEVSSP  240
AVFRCVKVSS VDDPDEQFAY QTAVNIGGHV FRGILYDHGP DHPSYTNVAA GDSSSGGGGG  300
GGLVQPLDLI AAAATAAASP ITNAESAHVS SATAPFFDSA SLYPPPLSTY MAGTQFFPHP  360
RS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I02380.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029724.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	5e-84	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A059ART0	0.0	A0A059ART0_EUCGR; Uncharacterized protein
STRING	XP_010029724.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	5e-71	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Eucgr.I02380.1.p
Entrez Gene	104419685

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]