PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9188_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 353aa    MW: 36691.3 Da    PI: 7.5238
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9188_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.62.2e-701352844152
      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkele 101
                 +++sCqdCGnqakkdCah RCRtCCksrgf+C thv+stWvpaakrrerqqql + + ++   + ++  +kr+r++  +++s+l +t+++++++ + le
  RrC9188_p1 135 NSVSCQDCGNQAKKDCAHVRCRTCCKSRGFQCPTHVRSTWVPAAKRRERQQQLGTVQPQTHLPRgDSGVPKRQRDNLLATSSSLVCTRIPTHHNASGLE 233
                 5689*************************************************99987776665588899***************************** PP

      DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                 + ++P+evss+avfrcvrvs v+dgeee+aYqtavsigGhvfkGiLyd+G+
  RrC9188_p1 234 VGDFPAEVSSPAVFRCVRVSPVEDGEEEFAYQTAVSIGGHVFKGILYDNGP 284
                 **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.9E-64136284IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.6E-26138180IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-26237284IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAGFFSLDGG GGRGGGGDGQ EEHRTSRNPP PPVSESWLWY RNPNVNANAN APSSSNAADL  60
GTLELWQNHN QQEIMFQHQQ HQQRLDLYSS AAGLGVGPSN HSQFNISGET SNAGAGGTAA  120
AALMMMRSGG SGGGNSVSCQ DCGNQAKKDC AHVRCRTCCK SRGFQCPTHV RSTWVPAAKR  180
RERQQQLGTV QPQTHLPRGD SGVPKRQRDN LLATSSSLVC TRIPTHHNAS GLEVGDFPAE  240
VSSPAVFRCV RVSPVEDGEE EFAYQTAVSI GGHVFKGILY DNGPGSIGGG GYNVGESSSG  300
GGGAQRMNLI TAGTVTVATA SSSTPNAGGI GGSSAAYTDP AALYPTPINT FMA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052620.0GU205262.1 Brassica rapa subsp. pekinensis stylish (STY1-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602805.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD401e-171SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A3P5YHC60.0A0A3P5YHC6_BRACM; Uncharacterized protein
STRINGBo8g081900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-136Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]